Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_pT_E16
         (587 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyce...    27   1.5  
SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomy...    27   2.7  

>SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1610

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = -3

Query: 249 LRNIFTLYLKGMYIFRC 199
           LR IFT Y KG ++ RC
Sbjct: 434 LRTIFTRYFKGEFVLRC 450


>SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2052

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 15/52 (28%), Positives = 27/52 (51%)
 Frame = +3

Query: 258 INLKQLLLKTNLYSNTFRKTG*IRANPTIFKVVIDEYNAISESK*LSLRRIF 413
           I L + +LKT    N F   G +  +P + K+V+D+   + +   + L R+F
Sbjct: 712 IQLNRQVLKTRRTYNLFSDLGYLLQHPQVKKLVVDDTRYVHQY--IDLLRVF 761


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,180,493
Number of Sequences: 5004
Number of extensions: 42473
Number of successful extensions: 78
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 75
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 78
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 254167452
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)