Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_pT_E16
         (587 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z72508-5|CAA96638.1|  525|Caenorhabditis elegans Hypothetical pr...    29   1.9  
AC087079-16|AAO12401.2|  509|Caenorhabditis elegans Hypothetical...    27   7.5  

>Z72508-5|CAA96638.1|  525|Caenorhabditis elegans Hypothetical
           protein F28H7.6 protein.
          Length = 525

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 2/61 (3%)
 Frame = -2

Query: 430 ILNWITKIRLRLNHFDSDIALYSSITTLKIVGFALIHPVLRNVFEYKLVFKSNCL--RFI 257
           +L  + K++  L HFDS    YS  TT  ++G   +  +     E+   F+ N L   F+
Sbjct: 446 MLRQLRKVKAVLRHFDSKSDTYSEKTTYYLIGGCFVIAIF---MEFIWFFRKNLLLPNFL 502

Query: 256 Y 254
           Y
Sbjct: 503 Y 503


>AC087079-16|AAO12401.2|  509|Caenorhabditis elegans Hypothetical
           protein Y37E3.16 protein.
          Length = 509

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 15/33 (45%), Positives = 18/33 (54%)
 Frame = -2

Query: 208 F*MQIVCFFIIVESYMKVVIRSIFLLKLYKLDP 110
           F  Q VC FIIV +    VI S+ L +LY   P
Sbjct: 173 FKWQYVCGFIIVYNLASWVIESMILRRLYNETP 205


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,617,301
Number of Sequences: 27780
Number of extensions: 228252
Number of successful extensions: 378
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 372
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 378
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1237082886
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)