Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_pT_E13
         (792 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces...    28   1.8  
SPCC1682.08c |||RNA-binding protein Mcp2|Schizosaccharomyces pom...    27   2.3  
SPCC825.02 |||glucosidase II Gtb1 |Schizosaccharomyces pombe|chr...    26   5.4  
SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces ...    25   9.4  

>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3699

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 16/51 (31%), Positives = 24/51 (47%)
 Frame = -2

Query: 668  ETPGFQIFNKYQGFLFVAEQNHNPFDVVAWHGNYVPYKYDLNNFMVINAVL 516
            + P  Q   +Y  FL   E +H  FD +   G Y+ +K + N+F  I   L
Sbjct: 3285 KVPKKQYLEQYSSFL--CEFHHQKFDEIEVPGQYLLHKDNNNSFSCIERFL 3333


>SPCC1682.08c |||RNA-binding protein Mcp2|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 703

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 18/54 (33%), Positives = 25/54 (46%), Gaps = 3/54 (5%)
 Frame = -2

Query: 596 FDVVAW--HGNYVPYKYDLNNFMVINAVLYDHCD-PSIFTVLTCPSAKPGIAIA 444
           F V  W    N+ PY+  L NF   N  L  H   PSI T +   ++KP   ++
Sbjct: 206 FSVSPWISSSNFNPYEASLANFQSDNCKLKSHNSLPSIRTNVRYSNSKPSTPLS 259


>SPCC825.02 |||glucosidase II Gtb1 |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 506

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 9/37 (24%), Positives = 20/37 (54%)
 Frame = +3

Query: 75  IREMLWQVLPTFVIFGVQFLTGFRAPLGDGQTQRRFK 185
           +  ++W +  + + FG+   +    PL D ++ RRF+
Sbjct: 308 LNSLVWNIKLSLINFGILSPSASSTPLTDSESYRRFE 344


>SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1888

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = -2

Query: 419  WSVQEHTFRPPYYHRNCMSEFMGLI 345
            W+++   F PPY   +C S+F+  I
Sbjct: 1761 WNIEGSEFPPPYNTVDCRSKFVKTI 1785


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,480,985
Number of Sequences: 5004
Number of extensions: 76820
Number of successful extensions: 175
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 169
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 175
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 385381248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)