Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_pT_E13
         (792 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0021 - 214401-214613,214707-214790,214887-215041,215165-21...   315   2e-86
01_01_0450 - 3344203-3344259,3344339-3344506,3344743-3344956,334...    29   5.6  
07_01_0624 + 4651995-4654715                                           28   7.4  

>06_01_0021 -
           214401-214613,214707-214790,214887-215041,215165-215234,
           215334-215509,215631-215803,216715-216938
          Length = 364

 Score =  315 bits (774), Expect = 2e-86
 Identities = 144/240 (60%), Positives = 173/240 (72%), Gaps = 2/240 (0%)
 Frame = -2

Query: 791 RGYILEVFDGHFKLPDXGPIGXNGLANPRDFXTPVAHYVDEETPGFQIFNKYQGFLFVAE 612
           RGY+ E+F  HF+LPD GPIG NGLA+ RDF +P A +     PG+ I  KY G LF A 
Sbjct: 113 RGYVSEIFGTHFQLPDLGPIGANGLASARDFLSPTAWFEQVHRPGYTIVQKYGGELFTAT 172

Query: 611 QNHNPFDVVAWHGNYVPYKYDLNNFMVINAVLYDHCDPSIFTVLTCPSAKPGIAIADFVI 432
           Q+ +PF+VVAWHGNYVPYKYDL+ F   N VL+DH DPS+ TVLT P+ KPG+A+ DFVI
Sbjct: 173 QDFSPFNVVAWHGNYVPYKYDLSKFCPFNTVLFDHADPSVNTVLTAPTDKPGVALLDFVI 232

Query: 431 FPPRWSVQEHTFRPPYYHRNCMSEFMGLILGSYEAKEGGFLPGGASLHSMMTPHGPDDKC 252
           FPPRW V E+TFRPPYYHRNCMSEFMGLI G YEAK  GFLPGGASLHS MTPHGPD K 
Sbjct: 233 FPPRWLVAENTFRPPYYHRNCMSEFMGLIYGIYEAKADGFLPGGASLHSCMTPHGPDTKT 292

Query: 251 FNAASN--GALVPQKIAVGTQAFMFESSLSLAITKWGAETCQKLDPKYYECWQNLPKHFS 78
           + A  +   A  P +++ GT AFMFES+L   + +W  ++  + D  YY+CW  L  HFS
Sbjct: 293 YEATISRPDANEPSRLS-GTLAFMFESALIPRVCQWALDSPSR-DLDYYQCWIGLKSHFS 350


>01_01_0450 -
           3344203-3344259,3344339-3344506,3344743-3344956,
           3345039-3345101,3345582-3345769,3345846-3346029,
           3346535-3346606,3346676-3346787,3346878-3346953,
           3347050-3347100,3347179-3347260,3347331-3347567,
           3347650-3347772,3348141-3348326,3348680-3349625,
           3350426-3350551,3350683-3350811,3350918-3351049,
           3351167-3351301,3351450-3351575,3352080-3352148,
           3352149-3352205,3352302-3352436,3352600-3352704,
           3352841-3352906,3353333-3353503,3353806-3353983
          Length = 1395

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = -1

Query: 369 YERVHGVDSWFLRGERRRFPSRRCVSAF 286
           Y   H V++ +L GE+RRF  R  +S F
Sbjct: 758 YIDTHSVNTDYLAGEKRRFGGRNSISPF 785


>07_01_0624 + 4651995-4654715
          Length = 906

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = -1

Query: 423 QMVCAGAHFQTSLLPQKLYERVHGVDSWFLR 331
           Q +C G     SL+P++ + R+ G+D W +R
Sbjct: 873 QQLCIG-----SLMPEEFHRRLEGIDRWIVR 898


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,877,823
Number of Sequences: 37544
Number of extensions: 526753
Number of successful extensions: 1182
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1180
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2138915688
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)