Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P04_pT_E07
(688 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC18H10.03 |tif35||translation initiation factor eIF3g|Schizos... 117 2e-27
SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 40 4e-04
SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces... 36 0.007
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce... 36 0.007
SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces po... 35 0.010
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 35 0.013
SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101 |Sch... 35 0.013
SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual 34 0.017
SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces p... 32 0.068
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar... 29 0.63
SPBC660.15 |||mRNA cleavage factor complex subunit |Schizosaccha... 29 0.83
SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyc... 28 1.1
SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr 1|||... 28 1.5
SPAC20G8.08c |fft1||fun thirty related protein Fft1|Schizosaccha... 27 1.9
SPBC29A3.07c |||U2 snRNP-associated protein Sf3b14 homolog |Schi... 27 2.5
SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 27 2.5
SPBC29A10.14 |rec8||meiotic cohesin complex subunit Rec8|Schizos... 26 4.4
SPCC417.08 |tef3||translation elongation factor eEF3|Schizosacch... 26 5.9
SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein Sap49|Schizo... 26 5.9
>SPBC18H10.03 |tif35||translation initiation factor
eIF3g|Schizosaccharomyces pombe|chr 2|||Manual
Length = 282
Score = 117 bits (281), Expect = 2e-27
Identities = 72/225 (32%), Positives = 115/225 (51%), Gaps = 15/225 (6%)
Frame = -2
Query: 675 NGXKIVTEYKYDNDNKKVKIVRTYK---IEKRVVSKSIAKRKTWSKFGDSASDKPGPNPA 505
+G K + E++ D++ KKVK+ R + I +RV ++A+RK W KFG A G +
Sbjct: 29 DGTKTMIEFRIDDNGKKVKVTRVIRKTVITERV-QHAVAERKKWKKFGKEAGKNSGVDAR 87
Query: 504 TTNVAEDVFMQ----FITSKEESQRPDDGELDGLK-PPSSNVIFKCRTCQGDHLTLYCPF 340
TT+V E+V ++ + T+KEE Q D+ L K + + +CR C+G+H T CP+
Sbjct: 88 TTSVGENVQLRLQLGWTTTKEEEQ--DEAALAAAKVKAKGSSVVRCRACKGNHFTAQCPY 145
Query: 339 KH----TQIXXXXXXXXXXXXXXXXXASNKYIPP---SSAGRIPGRDQPPVRREDVTAIR 181
K +YI P + +GR G R+D +R
Sbjct: 146 KSIIGPVDEPPLDASPVSSRASGALGEKGRYIAPHLRAGSGRESGDSMFKRERDDSATLR 205
Query: 180 ISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHF 46
++NLS+ E ++ DL + FG + ++YLAK+K TG KGFA+V +
Sbjct: 206 VTNLSDDTREEELRDLFRRFGGIQRVYLAKDKETGRAKGFAFVSY 250
>SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 121
Score = 39.5 bits (88), Expect = 4e-04
Identities = 17/56 (30%), Positives = 31/56 (55%)
Frame = -2
Query: 213 PVRREDVTAIRISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHF 46
P + + I ++ + A E ++DL FGPV L+L ++ TG+ KG+A + +
Sbjct: 3 PAKSVEGYIIIVTGVHPEATEEQVEDLFADFGPVKNLHLNLDRRTGYVKGYALIEY 58
>SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 369
Score = 35.5 bits (78), Expect = 0.007
Identities = 16/63 (25%), Positives = 31/63 (49%)
Frame = -2
Query: 207 RREDVTAIRISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKXQGRC 28
++E + + + NL +AD+ + G + ++ L + TG CKGF +V F C
Sbjct: 223 KKEPSSILFVGNLDFETTDADLKEHFGQVGQIRRVRLMTFEDTGKCKGFGFVDFPDIDTC 282
Query: 27 CES 19
++
Sbjct: 283 MKA 285
>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 604
Score = 35.5 bits (78), Expect = 0.007
Identities = 16/51 (31%), Positives = 26/51 (50%)
Frame = -2
Query: 198 DVTAIRISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHF 46
D + +S L+N ++ D + GPV + ++K +G KG AYV F
Sbjct: 238 DRRTVFVSQLANRLTSRELYDFFEQAGPVRDAQIVRDKISGRSKGVAYVEF 288
>SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 833
Score = 35.1 bits (77), Expect = 0.010
Identities = 15/45 (33%), Positives = 26/45 (57%)
Frame = -2
Query: 180 ISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHF 46
+ NL+ E D+ L FG + ++++ +K T + KGFAY+ F
Sbjct: 327 LRNLTYSCAEDDLKSLFGPFGQLEQVHMPIDKKTNNPKGFAYIDF 371
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 34.7 bits (76), Expect = 0.013
Identities = 20/65 (30%), Positives = 28/65 (43%), Gaps = 3/65 (4%)
Frame = -2
Query: 201 EDVTAIRISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFK---XQGR 31
E + + NLS A E D+ G G + + L + +G KGF YV F +
Sbjct: 363 EPSDTVFVGNLSFNATEDDLSTAFGGCGDIQSIRLPTDPQSGRLKGFGYVTFSDIDSAKK 422
Query: 30 CCESN 16
C E N
Sbjct: 423 CVEMN 427
>SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 261
Score = 34.7 bits (76), Expect = 0.013
Identities = 15/48 (31%), Positives = 28/48 (58%)
Frame = -2
Query: 180 ISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKXQ 37
+S LS E+DI+ +GP+ ++ + + K TG G+A+V F+ +
Sbjct: 104 LSRLSYDTKESDIEREFTRYGPIERIRVVRNKVTGKSMGYAFVVFERE 151
>SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual
Length = 166
Score = 34.3 bits (75), Expect = 0.017
Identities = 14/51 (27%), Positives = 26/51 (50%)
Frame = -2
Query: 198 DVTAIRISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHF 46
D ++ + N+ ++ G V+++ + +K TGH KGFAY+ F
Sbjct: 53 DAQSVYVGNVDYSVTPEELQSHFASCGSVNRVTILCDKFTGHPKGFAYIEF 103
>SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 517
Score = 32.3 bits (70), Expect = 0.068
Identities = 23/77 (29%), Positives = 32/77 (41%), Gaps = 4/77 (5%)
Frame = -2
Query: 261 YIPPSSAGRIPGRDQPPVRREDVT----AIRISNLSNFAVEADIDDLVKGFGPVHKLYLA 94
YI P + + + DV I ISNL E + +L+K FG + L
Sbjct: 283 YIVPQITPEVSQKRSDDYAKNDVLDSKDKIYISNLPLNLGEDQVVELLKPFGDLLSFQLI 342
Query: 93 KEKSTGHCKGFAYVHFK 43
K + G KGF + FK
Sbjct: 343 KNIADGSSKGFCFCEFK 359
>SPAC57A7.04c |pabp||mRNA export shuttling protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 653
Score = 29.1 bits (62), Expect = 0.63
Identities = 13/48 (27%), Positives = 24/48 (50%)
Frame = -2
Query: 189 AIRISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHF 46
++ + L EA + +L GPV + + ++ T G+AYV+F
Sbjct: 81 SLYVGELDPSVTEAMLFELFNSIGPVASIRVCRDAVTRRSLGYAYVNF 128
Score = 27.9 bits (59), Expect = 1.5
Identities = 15/57 (26%), Positives = 26/57 (45%)
Frame = -2
Query: 216 PPVRREDVTAIRISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHF 46
P +R+ + I NL + D FG + +A ++ G+ KG+ +VHF
Sbjct: 160 PSLRKMGTGNVFIKNLDPAIDNKALHDTFSAFGKILSCKVAVDE-LGNAKGYGFVHF 215
>SPBC660.15 |||mRNA cleavage factor complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 474
Score = 28.7 bits (61), Expect = 0.83
Identities = 16/57 (28%), Positives = 27/57 (47%)
Frame = -2
Query: 213 PVRREDVTAIRISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFK 43
P RED I L+ + + D + FG V + ++ +TG +GF ++ FK
Sbjct: 157 PFNREDGKMF-IGGLNWETTDDSLRDYFEQFGEVLDCTVMRDSTTGRSRGFGFLTFK 212
>SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 438
Score = 28.3 bits (60), Expect = 1.1
Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 3/46 (6%)
Frame = -2
Query: 171 LSNFAVEADIDDLVKGFGP---VHKLYLAKEKSTGHCKGFAYVHFK 43
+ N A EA+ + L + FG + + + ++ T KGFAY+ FK
Sbjct: 274 VGNLAFEAEEEPLWRYFGDCGSIDYVRIVRDPKTNLGKGFAYIQFK 319
>SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr
1|||Manual
Length = 710
Score = 27.9 bits (59), Expect = 1.5
Identities = 14/54 (25%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
Frame = -2
Query: 198 DVTAIRISNLSNFAV--EADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFK 43
D + + + NL + + ++ ++DL FG + LA ++G KG+ +V F+
Sbjct: 380 DPSNLYVKNLDDTVITCKSQLEDLFSPFGSILSSMLACYPNSGISKGYGFVAFR 433
>SPAC20G8.08c |fft1||fun thirty related protein
Fft1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 944
Score = 27.5 bits (58), Expect = 1.9
Identities = 20/81 (24%), Positives = 31/81 (38%)
Frame = -2
Query: 633 NKKVKIVRTYKIEKRVVSKSIAKRKTWSKFGDSASDKPGPNPATTNVAEDVFMQFITSKE 454
NK + + IEK V K AKRK + + G K P E+ + +
Sbjct: 172 NKSAQKLNNQPIEKSSVDKENAKRKRYVEEGTKQGQKKKPLRVIELSDEETNEDDLLGQS 231
Query: 453 ESQRPDDGELDGLKPPSSNVI 391
+ D +D P +S+ I
Sbjct: 232 PTACTTDANIDNSIPENSDKI 252
>SPBC29A3.07c |||U2 snRNP-associated protein Sf3b14 homolog
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 137
Score = 27.1 bits (57), Expect = 2.5
Identities = 20/70 (28%), Positives = 30/70 (42%), Gaps = 2/70 (2%)
Frame = -2
Query: 216 PP--VRREDVTAIRISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFK 43
PP V +E + + I NLS ++ DL +GPV ++ L T Y + +
Sbjct: 2 PPSTVNQEVNSILFIKNLSFKITAEEMYDLFGRYGPVRQIRLGNTVQTRGTAFVVYENVQ 61
Query: 42 XQGRCCESNS 13
R CE S
Sbjct: 62 DARRACEKLS 71
>SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 422
Score = 27.1 bits (57), Expect = 2.5
Identities = 11/47 (23%), Positives = 21/47 (44%)
Frame = -2
Query: 186 IRISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHF 46
+ + N+ E + D+ K GPV L + +G KG+ + +
Sbjct: 7 VYVGNIPYEMAEEQVIDIFKQSGPVKSFQLVIDPESGQPKGYGFCEY 53
>SPBC29A10.14 |rec8||meiotic cohesin complex subunit
Rec8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 561
Score = 26.2 bits (55), Expect = 4.4
Identities = 27/103 (26%), Positives = 47/103 (45%), Gaps = 9/103 (8%)
Frame = -2
Query: 687 EVVENGXKIVTEYKYDNDNKKVKIVRTYKIEKRVVSKSIAKRKTWSKFGDSAS------- 529
E +E + +++++ + + + + T + +R S AK+K +KF D S
Sbjct: 296 ENIELSTRTLSQWRKNYVERMIALEATKYVRRRGASS--AKKKELNKFFDWESFHPLLKP 353
Query: 528 --DKPGPNPATTNVAEDVFMQFITSKEESQRPDDGELDGLKPP 406
+K P+ T + +DV TS+ E R GEL GL P
Sbjct: 354 WIEKLKPSNNTPSEIDDVLRNIDTSEVEVGRDVQGEL-GLNIP 395
>SPCC417.08 |tef3||translation elongation factor
eEF3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1047
Score = 25.8 bits (54), Expect = 5.9
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = -3
Query: 89 KKVLDIAKDLLMCTSSXRADAAKAIQS 9
K + ++ K L +C ++ ADAAKA+ S
Sbjct: 12 KALEELLKHLTVCDAAEEADAAKALAS 38
>SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein
Sap49|Schizosaccharomyces pombe|chr 1|||Manual
Length = 335
Score = 25.8 bits (54), Expect = 5.9
Identities = 13/54 (24%), Positives = 26/54 (48%)
Frame = -2
Query: 207 RREDVTAIRISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHF 46
R +D T I + NL ++ + +L GPV +++ +++ GF + F
Sbjct: 7 RNQDAT-IYLGNLDEKVTDSILFELCLQAGPVVNIHIPRDRVRNSHNGFGFCEF 59
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,434,186
Number of Sequences: 5004
Number of extensions: 43192
Number of successful extensions: 133
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 132
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 317927284
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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