Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_pT_E07
         (688 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    24   1.2  
AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength rhodo...    24   1.2  
AM420631-1|CAM06631.1|  153|Apis mellifera bursicon subunit alph...    24   1.2  
AB208107-1|BAE72139.1|   71|Apis mellifera Broad complex zinc fi...    22   4.8  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               21   8.3  

>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 9/34 (26%), Positives = 18/34 (52%)
 Frame = +3

Query: 537 NLQICSKFYVWQYSLKQHVFQFCMS*QFSLSCYH 638
           +L+  S  +V   ++   +  FCMS    ++CY+
Sbjct: 82  SLRTPSNLFVINLAISNFLMMFCMSPPMVINCYY 115


>AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 152

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 9/34 (26%), Positives = 18/34 (52%)
 Frame = +3

Query: 537 NLQICSKFYVWQYSLKQHVFQFCMS*QFSLSCYH 638
           +L+  S  +V   ++   +  FCMS    ++CY+
Sbjct: 48  SLRTPSNLFVINLAISDFLMMFCMSPPMVINCYY 81


>AM420631-1|CAM06631.1|  153|Apis mellifera bursicon subunit alpha
           protein precursor protein.
          Length = 153

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 7/21 (33%), Positives = 12/21 (57%)
 Frame = -1

Query: 115 CA*TVPCEGKKYWTLQRICLC 53
           C+  +   G K W ++R C+C
Sbjct: 57  CSSYLQVSGSKIWQMERSCMC 77


>AB208107-1|BAE72139.1|   71|Apis mellifera Broad complex zinc
           finger domain-Z2 isoform protein.
          Length = 71

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 13/37 (35%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
 Frame = +3

Query: 543 QICSKFYVWQYSLKQHVFQFCMS*QFSLSCYHC-RIY 650
           Q+C K    + SLK+HV       Q    C  C R+Y
Sbjct: 9   QLCGKVLCSKASLKRHVADKHAERQEEYRCVICERVY 45


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = +1

Query: 178 YTDGSYVFTTHRGL 219
           Y DG+ VF  H G+
Sbjct: 799 YIDGNVVFVCHNGM 812


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 163,702
Number of Sequences: 438
Number of extensions: 2952
Number of successful extensions: 9
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20952180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)