Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P04_pT_E03
(607 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC162.07 |ent1||epsin|Schizosaccharomyces pombe|chr 3|||Manual 27 2.1
SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase Ppk30|Schizos... 27 2.8
SPAC3F10.10c |map3||pheromone M-factor receptor |Schizosaccharom... 27 2.8
SPAC6G9.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 27 2.8
SPAC6B12.08 |mug185||DNAJ domain protein Jjj family|Schizosaccha... 26 3.7
SPAC8C9.14 |prr1||transcription factor Prr1|Schizosaccharomyces ... 26 3.7
SPBC19C2.01 |cdc28|prp8|ATP-dependent RNA helicase Cdc28 |Schizo... 25 6.5
SPCC1183.11 ||SPCC31H12.01|MS ion channel protein 1|Schizosaccha... 25 6.5
SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit Bgs3|Schizo... 25 6.5
SPCC330.01c |rhp16|SPCC613.13c, rad16|Rad16 homolog Rhp16|Schizo... 25 8.6
>SPCC162.07 |ent1||epsin|Schizosaccharomyces pombe|chr 3|||Manual
Length = 706
Score = 27.1 bits (57), Expect = 2.1
Identities = 11/52 (21%), Positives = 31/52 (59%)
Frame = +2
Query: 368 PAPSSDYNSRQQGDRRVEGRDRQPQREVVHAQREAQRRQLDQHQDVDQRQLL 523
P+PS+++NS ++ D ++ + +R+ A+ +A+RR + + + ++ +
Sbjct: 219 PSPSAEHNSAEENDPELQRVIEESKRQ---AEEDAKRRNMANDSEAELQKAI 267
>SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase
Ppk30|Schizosaccharomyces pombe|chr 2|||Manual
Length = 953
Score = 26.6 bits (56), Expect = 2.8
Identities = 15/44 (34%), Positives = 20/44 (45%)
Frame = +3
Query: 312 RAPRGCSTTHAARCSHTLIQPRPRTTTPDSRATGV*RAATASPS 443
R P G T ++R +HT + P P T S V R + S S
Sbjct: 355 RTPSGSLTPLSSRPAHTSLPPIPTVQTTSSNVPPVNRPSLKSKS 398
>SPAC3F10.10c |map3||pheromone M-factor receptor
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 365
Score = 26.6 bits (56), Expect = 2.8
Identities = 9/27 (33%), Positives = 17/27 (62%)
Frame = -1
Query: 184 YGNWVFNVAASVLLPVWVVLWQIVCNS 104
Y NW+++V S+LLP+ ++ + S
Sbjct: 109 YENWIWHVCLSILLPLIIMAMMVPLES 135
>SPAC6G9.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 681
Score = 26.6 bits (56), Expect = 2.8
Identities = 18/66 (27%), Positives = 29/66 (43%)
Frame = +3
Query: 300 MAAVRAPRGCSTTHAARCSHTLIQPRPRTTTPDSRATGV*RAATASPSGKLCMPSARHSV 479
+AA A G + + + ++TLI P P + P + G A + S SV
Sbjct: 271 LAASTASTGSTDSSGSNIANTLIAPTPTISPPSANTVGNPSPADTPGFNVPSLISDDPSV 330
Query: 480 DSSIST 497
SS+S+
Sbjct: 331 SSSLSS 336
>SPAC6B12.08 |mug185||DNAJ domain protein Jjj
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 380
Score = 26.2 bits (55), Expect = 3.7
Identities = 13/38 (34%), Positives = 19/38 (50%)
Frame = +2
Query: 386 YNSRQQGDRRVEGRDRQPQREVVHAQREAQRRQLDQHQ 499
YNS Q+ R+ RDR+ +E Q A +DQ +
Sbjct: 215 YNSLQEASRKQSERDRRQYQETFKNQSIASWTIIDQEE 252
>SPAC8C9.14 |prr1||transcription factor Prr1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 539
Score = 26.2 bits (55), Expect = 3.7
Identities = 11/20 (55%), Positives = 11/20 (55%)
Frame = +2
Query: 344 GTLQPHAYPAPSSDYNSRQQ 403
GT QP Y PSSDY Q
Sbjct: 251 GTAQPSLYNTPSSDYELANQ 270
>SPBC19C2.01 |cdc28|prp8|ATP-dependent RNA helicase Cdc28
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1055
Score = 25.4 bits (53), Expect = 6.5
Identities = 8/29 (27%), Positives = 18/29 (62%)
Frame = +2
Query: 419 EGRDRQPQREVVHAQREAQRRQLDQHQDV 505
+ R + P+RE+ QR+ + D++++V
Sbjct: 116 KSRSKTPKREIARRQRDEDEWESDEYEEV 144
>SPCC1183.11 ||SPCC31H12.01|MS ion channel protein
1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1011
Score = 25.4 bits (53), Expect = 6.5
Identities = 11/38 (28%), Positives = 22/38 (57%)
Frame = +2
Query: 404 GDRRVEGRDRQPQREVVHAQREAQRRQLDQHQDVDQRQ 517
G +R+ GRD P + +A EA RR+ ++ + ++ +
Sbjct: 907 GSKRL-GRDSLPDAVIENAGTEAMRREAEERRRAEEEE 943
>SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit
Bgs3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1826
Score = 25.4 bits (53), Expect = 6.5
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = +3
Query: 399 SRATGV*RAATASPSGKLCMPSARHSVDSSISTRM 503
+R TGV R SPS KL M R + + I T +
Sbjct: 1501 TRITGVNRKVKGSPSNKLTMDMPRAGLRNVIFTEV 1535
>SPCC330.01c |rhp16|SPCC613.13c, rad16|Rad16 homolog
Rhp16|Schizosaccharomyces pombe|chr 3|||Manual
Length = 963
Score = 25.0 bits (52), Expect = 8.6
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = +3
Query: 99 STLLQTICQSTTHTGSSTDAATLN 170
ST +I ++THTGSSTD N
Sbjct: 180 STPPLSISDTSTHTGSSTDNVEAN 203
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,240,822
Number of Sequences: 5004
Number of extensions: 16586
Number of successful extensions: 61
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 61
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 61
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 266270664
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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