Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_pT_E03
         (607 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1303 - 36132588-36132710,36133879-36134103,36134318-361347...    32   0.41 
06_02_0291 - 13842226-13842421,13842444-13842694                       31   0.71 
01_06_0044 - 25922298-25923434                                         31   0.94 
05_07_0102 + 27700395-27700426,27701034-27702087,27703205-27703420     30   1.2  
11_05_0084 + 18962892-18963383                                         29   2.2  
03_06_0341 - 33261210-33261327,33261411-33262057,33262950-332630...    29   2.2  
02_05_1338 + 35790726-35791862                                         29   2.2  
08_02_1567 - 27916010-27916118,27916256-27916391,27916675-279167...    28   5.0  
02_01_0194 + 1314181-1314661,1315656-1315723,1315834-1315965,131...    28   5.0  

>01_06_1303 -
           36132588-36132710,36133879-36134103,36134318-36134713,
           36135352-36135547,36135591-36135740,36135818-36135924,
           36135987-36136094,36136354-36136435,36136436-36136536,
           36136778-36136996,36137455-36137583,36137665-36137742,
           36137816-36137929,36138071-36138230,36139224-36139441
          Length = 801

 Score = 31.9 bits (69), Expect = 0.41
 Identities = 16/36 (44%), Positives = 19/36 (52%)
 Frame = +3

Query: 306 AVRAPRGCSTTHAARCSHTLIQPRPRTTTPDSRATG 413
           AVRA  GCST  AA  +   ++P  R   PDS   G
Sbjct: 2   AVRAAGGCSTAAAATLAFFRLRPLGRAVRPDSARAG 37


>06_02_0291 - 13842226-13842421,13842444-13842694
          Length = 148

 Score = 31.1 bits (67), Expect = 0.71
 Identities = 13/26 (50%), Positives = 15/26 (57%)
 Frame = -3

Query: 446 PAGAGGRGPLHAGRPAVGSCSPRTGL 369
           PA  GG G +HAGRP +    P  GL
Sbjct: 5   PARGGGTGQIHAGRPDLAVGQPAAGL 30


>01_06_0044 - 25922298-25923434
          Length = 378

 Score = 30.7 bits (66), Expect = 0.94
 Identities = 22/52 (42%), Positives = 27/52 (51%), Gaps = 3/52 (5%)
 Frame = -1

Query: 493 LIELSTLCLALGMHNFPLGLAVAALY---TPVALLSGVVVRGRGWISVWLQR 347
           L+ L   C + GMHN  L L+ AA     T  A L  VVV G   I VW++R
Sbjct: 275 LVNLPESCKS-GMHNMCLALSPAAAADDGTSNAALLSVVVHGSDRILVWVRR 325


>05_07_0102 + 27700395-27700426,27701034-27702087,27703205-27703420
          Length = 433

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 14/33 (42%), Positives = 16/33 (48%)
 Frame = -3

Query: 506 QHPGADRAVDAVPRAGHAQLPAGAGGRGPLHAG 408
           QH  A+R+    PR G    P G GG GP   G
Sbjct: 4   QHAAAERSGGGNPRGGGGGGPRGCGGGGPRSGG 36


>11_05_0084 + 18962892-18963383
          Length = 163

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 16/34 (47%), Positives = 18/34 (52%)
 Frame = -3

Query: 497 GADRAVDAVPRAGHAQLPAGAGGRGPLHAGRPAV 396
           G  RA+DAV  AGH     GAG   P HA   A+
Sbjct: 94  GLSRALDAVA-AGHGGRSPGAGHGAPRHAAEGAI 126


>03_06_0341 -
           33261210-33261327,33261411-33262057,33262950-33263061,
           33263313-33264097,33264797-33264867,33266323-33266635
          Length = 681

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 13/41 (31%), Positives = 24/41 (58%)
 Frame = +2

Query: 401 QGDRRVEGRDRQPQREVVHAQREAQRRQLDQHQDVDQRQLL 523
           Q  ++V+ + +Q Q++  H Q++ Q++   QHQ   Q Q L
Sbjct: 520 QQQQQVQQQQQQQQQQFQHQQQQQQQQFQQQHQQQQQSQQL 560


>02_05_1338 + 35790726-35791862
          Length = 378

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +3

Query: 423 AATASPSGKLCMPSARHSVDSSISTRM 503
           AA A+PS   C PS RH++   +S R+
Sbjct: 6   AAAAAPSPAPCFPSTRHTLPGLVSVRV 32


>08_02_1567 -
           27916010-27916118,27916256-27916391,27916675-27916771,
           27916866-27916970,27917058-27917240,27917764-27917823,
           27917909-27918096,27919234-27919294
          Length = 312

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = -3

Query: 467 RAGHAQLPAGAGGRGPLHAGRPAV 396
           RAGH ++P   G   PL  G P V
Sbjct: 86  RAGHPEVPVAEGSAEPLKGGEPRV 109


>02_01_0194 +
           1314181-1314661,1315656-1315723,1315834-1315965,
           1317581-1317742,1318288-1318611
          Length = 388

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 19/49 (38%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
 Frame = -1

Query: 418 YTPVALLSGVVVRGRGWISVWLQRAACVVLQPLGAL-TAAMCVYSVAVY 275
           YTP A +  V+ RGRG    ++ RA+ V +    A  TAA+ V S A +
Sbjct: 104 YTPAAAVGAVMKRGRGRPVGFVSRASPVSVAVTAATSTAAVVVSSPATH 152


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,577,397
Number of Sequences: 37544
Number of extensions: 156285
Number of successful extensions: 885
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 851
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 884
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1442939384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)