Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P04_pT_E03
(607 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC022072-1|AAH22072.2| 252|Homo sapiens BID protein protein. 36 0.11
Z19054-1|CAA79497.1| 781|Homo sapiens beta catenin protein. 33 0.78
X87838-1|CAA61107.1| 781|Homo sapiens beta-catenin protein. 33 0.78
BC058926-1|AAH58926.1| 781|Homo sapiens catenin (cadherin-assoc... 33 0.78
AY463360-1|AAR18817.1| 781|Homo sapiens catenin (cadherin-assoc... 33 0.78
AB062292-1|BAB93475.1| 511|Homo sapiens catenin beta 1 protein. 33 0.78
X84841-1|CAA59278.1| 437|Homo sapiens 68 kDa (U1) ribonucleopro... 29 9.6
X07401-1|CAA30303.1| 285|Homo sapiens hU1-70K protein (286 AA) ... 29 9.6
X06814-1|CAA29963.1| 233|Homo sapiens protein ( Human mRNA for ... 29 9.6
X06812-1|CAA29961.1| 301|Homo sapiens protein ( Human mRNA for ... 29 9.6
X04654-1|CAA28352.1| 614|Homo sapiens protein ( Human mRNA for ... 29 9.6
M57939-1|AAA36572.1| 437|Homo sapiens ribonucleoprotein antigen... 29 9.6
M22636-1|AAA03001.1| 437|Homo sapiens protein ( Human U1 small ... 29 9.6
BC001315-1|AAH01315.1| 437|Homo sapiens small nuclear ribonucle... 29 9.6
AL117507-1|CAB55969.1| 341|Homo sapiens hypothetical protein pr... 29 9.6
>BC022072-1|AAH22072.2| 252|Homo sapiens BID protein protein.
Length = 252
Score = 35.9 bits (79), Expect = 0.11
Identities = 22/51 (43%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Frame = -3
Query: 515 DAGQHPGADRAVDAVPRAGHAQLPAGAGGRGPLHAGRPAVG-SCSPRTGLD 366
+AG P RA + +PR GHA+ PA AGG PL P V SC +D
Sbjct: 11 EAGSRP-CPRAWETLPRPGHARAPA-AGGWSPLGHCEPGVSRSCRAAQAMD 59
>Z19054-1|CAA79497.1| 781|Homo sapiens beta catenin protein.
Length = 781
Score = 33.1 bits (72), Expect = 0.78
Identities = 13/20 (65%), Positives = 14/20 (70%)
Frame = -3
Query: 509 GQHPGADRAVDAVPRAGHAQ 450
G HPGAD VD +P GHAQ
Sbjct: 741 GHHPGADYPVDGLPDLGHAQ 760
>X87838-1|CAA61107.1| 781|Homo sapiens beta-catenin protein.
Length = 781
Score = 33.1 bits (72), Expect = 0.78
Identities = 13/20 (65%), Positives = 14/20 (70%)
Frame = -3
Query: 509 GQHPGADRAVDAVPRAGHAQ 450
G HPGAD VD +P GHAQ
Sbjct: 741 GHHPGADYPVDGLPDLGHAQ 760
>BC058926-1|AAH58926.1| 781|Homo sapiens catenin
(cadherin-associated protein), beta 1, 88kDa protein.
Length = 781
Score = 33.1 bits (72), Expect = 0.78
Identities = 13/20 (65%), Positives = 14/20 (70%)
Frame = -3
Query: 509 GQHPGADRAVDAVPRAGHAQ 450
G HPGAD VD +P GHAQ
Sbjct: 741 GHHPGADYPVDGLPDLGHAQ 760
>AY463360-1|AAR18817.1| 781|Homo sapiens catenin
(cadherin-associated protein), beta 1, 88kDa protein.
Length = 781
Score = 33.1 bits (72), Expect = 0.78
Identities = 13/20 (65%), Positives = 14/20 (70%)
Frame = -3
Query: 509 GQHPGADRAVDAVPRAGHAQ 450
G HPGAD VD +P GHAQ
Sbjct: 741 GHHPGADYPVDGLPDLGHAQ 760
>AB062292-1|BAB93475.1| 511|Homo sapiens catenin beta 1 protein.
Length = 511
Score = 33.1 bits (72), Expect = 0.78
Identities = 13/20 (65%), Positives = 14/20 (70%)
Frame = -3
Query: 509 GQHPGADRAVDAVPRAGHAQ 450
G HPGAD VD +P GHAQ
Sbjct: 471 GHHPGADYPVDGLPDLGHAQ 490
>X84841-1|CAA59278.1| 437|Homo sapiens 68 kDa (U1)
ribonucleoprotein protein.
Length = 437
Score = 29.5 bits (63), Expect = 9.6
Identities = 15/55 (27%), Positives = 28/55 (50%)
Frame = +2
Query: 353 QPHAYPAPSSDYNSRQQGDRRVEGRDRQPQREVVHAQREAQRRQLDQHQDVDQRQ 517
+P P P D + ++ +RR R+R +RE R RR+ + +D ++R+
Sbjct: 222 RPGPSPLPHRDRDRDRERERRERSRERDKERE-RRRSRSRDRRRRSRSRDKEERR 275
>X07401-1|CAA30303.1| 285|Homo sapiens hU1-70K protein (286 AA)
protein.
Length = 285
Score = 29.5 bits (63), Expect = 9.6
Identities = 15/55 (27%), Positives = 28/55 (50%)
Frame = +2
Query: 353 QPHAYPAPSSDYNSRQQGDRRVEGRDRQPQREVVHAQREAQRRQLDQHQDVDQRQ 517
+P P P D + ++ +RR R+R +RE R RR+ + +D ++R+
Sbjct: 70 RPGPSPLPHRDRDRDRERERRERSRERDKERE-RRRSRSRDRRRRSRSRDKEERR 123
>X06814-1|CAA29963.1| 233|Homo sapiens protein ( Human mRNA for
hU1-70K small nuclear RNP protein (RNP12). ).
Length = 233
Score = 29.5 bits (63), Expect = 9.6
Identities = 15/55 (27%), Positives = 28/55 (50%)
Frame = +2
Query: 353 QPHAYPAPSSDYNSRQQGDRRVEGRDRQPQREVVHAQREAQRRQLDQHQDVDQRQ 517
+P P P D + ++ +RR R+R +RE R RR+ + +D ++R+
Sbjct: 37 RPGPSPLPHRDRDRDRERERRERSRERDKERE-RRRSRSRDRRRRSRSRDKEERR 90
>X06812-1|CAA29961.1| 301|Homo sapiens protein ( Human mRNA for
hU1-70K snRNP protein (RNP8). ).
Length = 301
Score = 29.5 bits (63), Expect = 9.6
Identities = 15/55 (27%), Positives = 28/55 (50%)
Frame = +2
Query: 353 QPHAYPAPSSDYNSRQQGDRRVEGRDRQPQREVVHAQREAQRRQLDQHQDVDQRQ 517
+P P P D + ++ +RR R+R +RE R RR+ + +D ++R+
Sbjct: 173 RPGPSPLPHRDRDRDRERERRERSRERDKERE-RRRSRSRDRRRRSRSRDKEERR 226
>X04654-1|CAA28352.1| 614|Homo sapiens protein ( Human mRNA for U1
RNA-associated 70K protein. ).
Length = 614
Score = 29.5 bits (63), Expect = 9.6
Identities = 15/55 (27%), Positives = 28/55 (50%)
Frame = +2
Query: 353 QPHAYPAPSSDYNSRQQGDRRVEGRDRQPQREVVHAQREAQRRQLDQHQDVDQRQ 517
+P P P D + ++ +RR R+R +RE R RR+ + +D ++R+
Sbjct: 399 RPGPSPLPHRDRDRDRERERRERSRERDKERE-RRRSRSRDRRRRSRSRDKEERR 452
>M57939-1|AAA36572.1| 437|Homo sapiens ribonucleoprotein antigen
protein.
Length = 437
Score = 29.5 bits (63), Expect = 9.6
Identities = 15/55 (27%), Positives = 28/55 (50%)
Frame = +2
Query: 353 QPHAYPAPSSDYNSRQQGDRRVEGRDRQPQREVVHAQREAQRRQLDQHQDVDQRQ 517
+P P P D + ++ +RR R+R +RE R RR+ + +D ++R+
Sbjct: 222 RPGPSPLPHRDRDRDRERERRERSRERDKERE-RRRSRSRDRRRRSRSRDKEERR 275
>M22636-1|AAA03001.1| 437|Homo sapiens protein ( Human U1 small
nuclear ribonucleoprotein 70 kd protein mRNA, complete
cds. ).
Length = 437
Score = 29.5 bits (63), Expect = 9.6
Identities = 15/55 (27%), Positives = 28/55 (50%)
Frame = +2
Query: 353 QPHAYPAPSSDYNSRQQGDRRVEGRDRQPQREVVHAQREAQRRQLDQHQDVDQRQ 517
+P P P D + ++ +RR R+R +RE R RR+ + +D ++R+
Sbjct: 222 RPGPSPLPHRDRDRDRERERRERSRERDKERE-RRRSRSRDRRRRSRSRDKEERR 275
>BC001315-1|AAH01315.1| 437|Homo sapiens small nuclear
ribonucleoprotein 70kDa polypeptide (RNP antigen)
protein.
Length = 437
Score = 29.5 bits (63), Expect = 9.6
Identities = 15/55 (27%), Positives = 28/55 (50%)
Frame = +2
Query: 353 QPHAYPAPSSDYNSRQQGDRRVEGRDRQPQREVVHAQREAQRRQLDQHQDVDQRQ 517
+P P P D + ++ +RR R+R +RE R RR+ + +D ++R+
Sbjct: 222 RPGPSPLPHRDRDRDRERERRERSRERDKERE-RRRSRSRDRRRRSRSRDKEERR 275
>AL117507-1|CAB55969.1| 341|Homo sapiens hypothetical protein
protein.
Length = 341
Score = 29.5 bits (63), Expect = 9.6
Identities = 15/55 (27%), Positives = 28/55 (50%)
Frame = +2
Query: 353 QPHAYPAPSSDYNSRQQGDRRVEGRDRQPQREVVHAQREAQRRQLDQHQDVDQRQ 517
+P P P D + ++ +RR R+R +RE R RR+ + +D ++R+
Sbjct: 126 RPGPSPLPHRDRDRDRERERRERSRERDKERE-RRRSRSRDRRRRSRSRDKEERR 179
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 48,453,049
Number of Sequences: 237096
Number of extensions: 753792
Number of successful extensions: 4027
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 3734
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4003
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 6410414940
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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