Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_pT_E03
         (607 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81518-1|CAB04214.3|  601|Caenorhabditis elegans Hypothetical pr...    32   0.37 
Z81552-3|CAB04486.1|  470|Caenorhabditis elegans Hypothetical pr...    29   1.9  
U97194-8|AAB52447.3| 1254|Caenorhabditis elegans Prion-like-(q/n...    29   2.6  
Z73425-2|CAA97788.1| 1126|Caenorhabditis elegans Hypothetical pr...    27   7.9  
U80437-19|AAB37630.2|  580|Caenorhabditis elegans Conserved olig...    27   7.9  

>Z81518-1|CAB04214.3|  601|Caenorhabditis elegans Hypothetical
           protein F28D9.1 protein.
          Length = 601

 Score = 31.9 bits (69), Expect = 0.37
 Identities = 14/41 (34%), Positives = 26/41 (63%), Gaps = 3/41 (7%)
 Frame = +2

Query: 404 GDRRVEGRDRQPQREVVHAQREAQRRQLD---QHQDVDQRQ 517
           GDRR    DR+P R+    + E++RR+++   +H++ + RQ
Sbjct: 247 GDRRDRREDRRPVRDEKEREEESRRREIERKKRHEEAELRQ 287


>Z81552-3|CAB04486.1|  470|Caenorhabditis elegans Hypothetical
           protein F56G4.4 protein.
          Length = 470

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 9/48 (18%), Positives = 28/48 (58%)
 Frame = +2

Query: 374 PSSDYNSRQQGDRRVEGRDRQPQREVVHAQREAQRRQLDQHQDVDQRQ 517
           P++ +    + +++ +  +R+ Q++   A+ E +RR+ ++ +DV   +
Sbjct: 280 PNNKFKKLTKEEKKAQWEERRRQKDTERAEDEERRREAEEDEDVSDEE 327


>U97194-8|AAB52447.3| 1254|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 20
           protein.
          Length = 1254

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 16/55 (29%), Positives = 26/55 (47%)
 Frame = +2

Query: 353 QPHAYPAPSSDYNSRQQGDRRVEGRDRQPQREVVHAQREAQRRQLDQHQDVDQRQ 517
           Q + YP PS+   S QQ     + +  Q  ++ +  Q++ Q     Q Q V Q+Q
Sbjct: 495 QQYMYPGPSAQGLSMQQIAAIQQQQQHQQYQQRILQQQQQQAMMQQQQQQVQQQQ 549


>Z73425-2|CAA97788.1| 1126|Caenorhabditis elegans Hypothetical
           protein F12F6.6 protein.
          Length = 1126

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 15/40 (37%), Positives = 20/40 (50%)
 Frame = -3

Query: 500 PGADRAVDAVPRAGHAQLPAGAGGRGPLHAGRPAVGSCSP 381
           P A      VP+A ++ +P G GG  P   G+P  GS  P
Sbjct: 208 PSAYPGAPQVPQAPNSFIPPGTGGFPP---GQPTAGSFPP 244


>U80437-19|AAB37630.2|  580|Caenorhabditis elegans Conserved
           oligomeric golgi (cog)component protein 5 protein.
          Length = 580

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 12/32 (37%), Positives = 21/32 (65%)
 Frame = +2

Query: 398 QQGDRRVEGRDRQPQREVVHAQREAQRRQLDQ 493
           ++ +RR EG   + +R+VV  + EA ++ LDQ
Sbjct: 488 EERERRREGPRSEERRKVVVEEEEAPKKSLDQ 519


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,256,276
Number of Sequences: 27780
Number of extensions: 107052
Number of successful extensions: 602
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 518
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 598
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1300523034
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)