Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_pT_E03
         (607 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    24   1.0  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    24   1.0  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    24   1.0  
AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.    23   1.8  
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    23   2.3  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    23   2.3  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    23   2.3  
AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc fi...    22   4.1  

>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 24.2 bits (50), Expect = 1.0
 Identities = 14/45 (31%), Positives = 21/45 (46%)
 Frame = -1

Query: 442 LGLAVAALYTPVALLSGVVVRGRGWISVWLQRAACVVLQPLGALT 308
           +G  +  +Y P  L+  V++    W+S WL R A      LG  T
Sbjct: 220 MGYYLIQIYIPSGLI--VII---SWVSFWLNRNATPARVALGVTT 259


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 24.2 bits (50), Expect = 1.0
 Identities = 14/45 (31%), Positives = 21/45 (46%)
 Frame = -1

Query: 442 LGLAVAALYTPVALLSGVVVRGRGWISVWLQRAACVVLQPLGALT 308
           +G  +  +Y P  L+  V++    W+S WL R A      LG  T
Sbjct: 220 MGYYLIQIYIPSGLI--VII---SWVSFWLNRNATPARVALGVTT 259


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 24.2 bits (50), Expect = 1.0
 Identities = 14/45 (31%), Positives = 21/45 (46%)
 Frame = -1

Query: 442 LGLAVAALYTPVALLSGVVVRGRGWISVWLQRAACVVLQPLGALT 308
           +G  +  +Y P  L+  V++    W+S WL R A      LG  T
Sbjct: 159 MGYYLIQIYIPSGLI--VII---SWVSFWLNRNATPARVALGVTT 198


>AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.
          Length = 355

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = +2

Query: 434 QPQREVVHAQREAQRRQLDQHQD 502
           Q  R +VHA  E ++R L  H D
Sbjct: 240 QVYRRLVHAVNEIEKRLLFSHND 262


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = -1

Query: 421 LYTPVALLSGVVVRGRGWISVWLQRAACVVLQPLGALT 308
           +Y P  +L  V+V    W+S WL ++A      LG  T
Sbjct: 248 IYIPCCML--VIV---SWVSFWLDQSAVPARVSLGVTT 280


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = -1

Query: 421 LYTPVALLSGVVVRGRGWISVWLQRAACVVLQPLGALT 308
           +Y P  +L  V+V    W+S WL ++A      LG  T
Sbjct: 248 IYIPCCML--VIV---SWVSFWLDQSAVPARVSLGVTT 280


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 16/45 (35%), Positives = 21/45 (46%)
 Frame = -1

Query: 442 LGLAVAALYTPVALLSGVVVRGRGWISVWLQRAACVVLQPLGALT 308
           +G  +  +Y P  LL  VV+    W+S WL R A      LG  T
Sbjct: 213 MGNFLIQVYGPCVLL--VVL---SWVSFWLNREATADRVSLGITT 252


>AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc
           finger domain-Z1 isoform protein.
          Length = 111

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 14/43 (32%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
 Frame = +2

Query: 392 SRQQGDRRVEGRDRQ-PQREVVHAQREAQRRQLDQHQDVDQRQ 517
           + QQ     + R+R+  QRE        Q++Q  Q Q  DQ+Q
Sbjct: 62  NEQQRKEMEQMREREREQREHSDRVTSQQQQQQQQQQQQDQQQ 104


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 89,405
Number of Sequences: 438
Number of extensions: 1250
Number of successful extensions: 9
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17848938
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)