Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_pT_E02
         (706 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_02_0103 + 6797830-6798433,6799412-6799480,6799573-6799664,679...    29   3.6  
07_03_0591 + 19792694-19792738,19794190-19794509,19795104-197951...    29   4.8  

>02_02_0103 +
           6797830-6798433,6799412-6799480,6799573-6799664,
           6799968-6800002,6800306-6800470,6800561-6800657,
           6800915-6801031
          Length = 392

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = +3

Query: 543 PSDPRHHSNPHIRERLRGLRS 605
           PS P  H +PH R RLRG R+
Sbjct: 38  PSSPTPHPHPHRRLRLRGARA 58


>07_03_0591 +
           19792694-19792738,19794190-19794509,19795104-19795161,
           19798000-19798056,19798373-19798440,19798454-19798543,
           19798619-19798820,19798902-19798988,19799642-19799719,
           19799815-19800040,19800260-19800483,19801988-19802014,
           19802470-19802518,19802594-19802688,19802778-19802864,
           19802973-19803100,19803198-19803294,19803563-19803788,
           19803888-19804294
          Length = 856

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
 Frame = +2

Query: 335 FSNRAPLQTDNATIHV--THKHALILMVLVAKFKLRIYDDHFNLFQIKSKGL 484
           FS  A +QT +  +HV  T+K   I +VL   F L +    F +F +K++ L
Sbjct: 771 FSYPAVIQTSDGLVHVTYTYKRTQIKVVLPMLFGLLMVITSFIIFHVKNEFL 822


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,830,538
Number of Sequences: 37544
Number of extensions: 283028
Number of successful extensions: 706
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 696
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 706
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1815633512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)