Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_pT_D24
         (756 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC25B8.13c |isp7||2-OG-Fe|Schizosaccharomyces pombe|chr 1|||Ma...    27   2.2  
SPBC725.07 |pex5||peroxisomal targeting signal receptor |Schizos...    27   3.8  
SPBC106.17c |cys2||O-acetyltransferase |Schizosaccharomyces pomb...    25   8.8  
SPAC1786.04 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   8.8  
SPAC19A8.02 |||transcriptional coactivator |Schizosaccharomyces ...    25   8.8  
SPBC1105.01 |rrp12|SPBPB7E8.03|rRNA processing protein Rrp12|Sch...    25   8.8  

>SPAC25B8.13c |isp7||2-OG-Fe|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 397

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +1

Query: 205 NSARDRYTVPWGFNGFINYI 264
           NS  DRYT+P+   G I+Y+
Sbjct: 339 NSGSDRYTIPFFLQGNIDYV 358


>SPBC725.07 |pex5||peroxisomal targeting signal receptor
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 598

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = -2

Query: 404 RFLSTYQFYLRVTSSATSEDINLDYFSNKAK 312
           R +S    Y+RV S+    +INL YF + AK
Sbjct: 497 RAVSLQPQYVRVRSNMAVSNINLGYFEDAAK 527


>SPBC106.17c |cys2||O-acetyltransferase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 504

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 9/28 (32%), Positives = 15/28 (53%)
 Frame = -1

Query: 204 KVKPGFEKYYVLSSFQCSSGCMYPNYTV 121
           K+  GF+K+Y    F C  G + P + +
Sbjct: 76  KIVSGFKKFYHNKPFLCDHGGILPKFEI 103


>SPAC1786.04 |||sequence orphan|Schizosaccharomyces pombe|chr
          1|||Manual
          Length = 111

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 8/13 (61%), Positives = 11/13 (84%)
 Frame = +1

Query: 22 YLLDSWQYNVCDS 60
          Y+L +WQY +CDS
Sbjct: 22 YVLVNWQYAICDS 34


>SPAC19A8.02 |||transcriptional coactivator |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1213

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 18/52 (34%), Positives = 28/52 (53%)
 Frame = +3

Query: 519 FDRFYKKFLEKIYRFTSLDAEQPQQQGCTGLEICENEQGTNVIYKSGRVLRN 674
           FDR  K+ L+++   T+LDA +   Q     +IC+    TN   + G +LRN
Sbjct: 257 FDRIEKEILKRVQPPTNLDAYRFDPQ-----QICQ----TNATKRQGWLLRN 299


>SPBC1105.01 |rrp12|SPBPB7E8.03|rRNA processing protein
           Rrp12|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1001

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +3

Query: 378 IKLICR*KSQKKCSLLSPKIKHMCNKLIKYW 470
           IKLI +  S++  +L    I  +C+ LI YW
Sbjct: 249 IKLILKVLSERIDALSDAVIYELCDSLIPYW 279


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,029,405
Number of Sequences: 5004
Number of extensions: 61345
Number of successful extensions: 141
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 141
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 361294920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)