Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_pT_D22
         (589 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC27B12.01c |mmm1|SPBC30B4.09c|Mdm10/Mdm12/Mmm1 complex subuni...    27   2.7  
SPBC725.04 |||oxalyl-CoA decarboxylase |Schizosaccharomyces pomb...    26   3.5  
SPAC9G1.11c |spn4||septin Spn4|Schizosaccharomyces pombe|chr 1||...    25   6.2  

>SPBC27B12.01c |mmm1|SPBC30B4.09c|Mdm10/Mdm12/Mmm1 complex subunit
           Mmm1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 346

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 10/35 (28%), Positives = 20/35 (57%)
 Frame = -1

Query: 586 FRLFXGCKTLPNYHHSVTSKNGXKINVTSKVNLSV 482
           F +F  C+ LP+ H+S   +    +++T  +N +V
Sbjct: 150 FPVFSHCRVLPHQHNSSQLRAEMLVSLTDNINCTV 184


>SPBC725.04 |||oxalyl-CoA decarboxylase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 574

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +3

Query: 33  TYLCNKXDYFIFLQNKNGVYFGVD 104
           T + N+ D  + + N NGVY G+D
Sbjct: 459 TAIRNQLDLLVIVINNNGVYHGLD 482


>SPAC9G1.11c |spn4||septin Spn4|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 380

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = -1

Query: 577 FXGCKTLPNYHHSVTSKNG 521
           F G   LPN  H + S+NG
Sbjct: 8   FVGIADLPNQRHKIVSRNG 26


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,278,379
Number of Sequences: 5004
Number of extensions: 44102
Number of successful extensions: 119
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 119
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 254167452
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)