Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P04_pT_D22
(589 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U40410-2|AAL27229.1| 1876|Caenorhabditis elegans Lin-12 and glp-... 46 2e-05
U28735-11|AAM69114.1| 358|Caenorhabditis elegans Hypothetical p... 44 8e-05
U28735-10|AAM69112.1| 2427|Caenorhabditis elegans Hypothetical p... 44 8e-05
U28735-9|AAM69113.1| 1299|Caenorhabditis elegans Hypothetical pr... 44 8e-05
AF000263-6|AAO21394.1| 496|Caenorhabditis elegans Phenylalanyl ... 29 1.9
AF000263-5|AAG00015.1| 552|Caenorhabditis elegans Phenylalanyl ... 29 1.9
Z66498-2|CAA91291.2| 419|Caenorhabditis elegans Hypothetical pr... 29 2.4
Z79598-1|CAB01867.3| 586|Caenorhabditis elegans Hypothetical pr... 28 5.7
Z92822-4|CAD18893.2| 791|Caenorhabditis elegans Hypothetical pr... 27 7.5
Z92822-3|CAB07302.3| 774|Caenorhabditis elegans Hypothetical pr... 27 7.5
Z92822-2|CAB70188.2| 850|Caenorhabditis elegans Hypothetical pr... 27 7.5
Z83216-12|CAB05675.2| 323|Caenorhabditis elegans Hypothetical p... 27 9.9
>U40410-2|AAL27229.1| 1876|Caenorhabditis elegans Lin-12 and glp-1
x-hybridizingprotein 1, isoform a protein.
Length = 1876
Score = 46.0 bits (104), Expect = 2e-05
Identities = 22/80 (27%), Positives = 37/80 (46%), Gaps = 8/80 (10%)
Frame = -3
Query: 584 QVIXWMQNPTELSSLRDFQEWXQDK-CDVK-------GQPFCSLPNACPLTTRELPGETL 429
Q+I WM+ P +S ++ + + C + C +PN C +T L +
Sbjct: 1794 QLIDWMKRPVPISEMKSVRGKSKAVGCPITLSFNRNPSLSTCDIPNKCLYSTPSLSSQEH 1853
Query: 428 RLFTCMECPNNYPWILDPQG 369
+ TC+ CP YPW+ +P G
Sbjct: 1854 QFLTCLPCPTMYPWLENPAG 1873
>U28735-11|AAM69114.1| 358|Caenorhabditis elegans Hypothetical
protein F48E3.8c protein.
Length = 358
Score = 44.0 bits (99), Expect = 8e-05
Identities = 23/69 (33%), Positives = 37/69 (53%), Gaps = 2/69 (2%)
Frame = -3
Query: 584 QVIXWMQNPTELSSLRDFQEWXQDKCDVKGQPF-CSLPNACPLTTRELPGETLRLF-TCM 411
Q+I +M+NP +L++++ + W Q K +K + C P C + R G+ F C
Sbjct: 292 QIIDYMRNPVDLNNIKSLRSW-QCKPQMKDEANPCENPTTCSFSGR-ARGQFAHSFRMCG 349
Query: 410 ECPNNYPWI 384
CP +YPWI
Sbjct: 350 VCPKSYPWI 358
>U28735-10|AAM69112.1| 2427|Caenorhabditis elegans Hypothetical
protein F48E3.8a protein.
Length = 2427
Score = 44.0 bits (99), Expect = 8e-05
Identities = 23/69 (33%), Positives = 37/69 (53%), Gaps = 2/69 (2%)
Frame = -3
Query: 584 QVIXWMQNPTELSSLRDFQEWXQDKCDVKGQPF-CSLPNACPLTTRELPGETLRLF-TCM 411
Q+I +M+NP +L++++ + W Q K +K + C P C + R G+ F C
Sbjct: 2361 QIIDYMRNPVDLNNIKSLRSW-QCKPQMKDEANPCENPTTCSFSGR-ARGQFAHSFRMCG 2418
Query: 410 ECPNNYPWI 384
CP +YPWI
Sbjct: 2419 VCPKSYPWI 2427
>U28735-9|AAM69113.1| 1299|Caenorhabditis elegans Hypothetical protein
F48E3.8b protein.
Length = 1299
Score = 44.0 bits (99), Expect = 8e-05
Identities = 23/69 (33%), Positives = 37/69 (53%), Gaps = 2/69 (2%)
Frame = -3
Query: 584 QVIXWMQNPTELSSLRDFQEWXQDKCDVKGQPF-CSLPNACPLTTRELPGETLRLF-TCM 411
Q+I +M+NP +L++++ + W Q K +K + C P C + R G+ F C
Sbjct: 1233 QIIDYMRNPVDLNNIKSLRSW-QCKPQMKDEANPCENPTTCSFSGR-ARGQFAHSFRMCG 1290
Query: 410 ECPNNYPWI 384
CP +YPWI
Sbjct: 1291 VCPKSYPWI 1299
>AF000263-6|AAO21394.1| 496|Caenorhabditis elegans Phenylalanyl (f)
trna synthetaseprotein 1, isoform b protein.
Length = 496
Score = 29.5 bits (63), Expect = 1.9
Identities = 16/54 (29%), Positives = 28/54 (51%)
Frame = -3
Query: 584 QVIXWMQNPTELSSLRDFQEWXQDKCDVKGQPFCSLPNACPLTTRELPGETLRL 423
Q++ ++Q E +S++ Q+W D V G L N LTT+++ + L L
Sbjct: 16 QILDFLQESNEFNSIQLAQQWNLDHQKVIGAIKSLLANEGVLTTKDVTEKRLEL 69
>AF000263-5|AAG00015.1| 552|Caenorhabditis elegans Phenylalanyl (f)
trna synthetaseprotein 1, isoform a protein.
Length = 552
Score = 29.5 bits (63), Expect = 1.9
Identities = 16/54 (29%), Positives = 28/54 (51%)
Frame = -3
Query: 584 QVIXWMQNPTELSSLRDFQEWXQDKCDVKGQPFCSLPNACPLTTRELPGETLRL 423
Q++ ++Q E +S++ Q+W D V G L N LTT+++ + L L
Sbjct: 72 QILDFLQESNEFNSIQLAQQWNLDHQKVIGAIKSLLANEGVLTTKDVTEKRLEL 125
>Z66498-2|CAA91291.2| 419|Caenorhabditis elegans Hypothetical
protein M195.2 protein.
Length = 419
Score = 29.1 bits (62), Expect = 2.4
Identities = 14/41 (34%), Positives = 19/41 (46%)
Frame = -3
Query: 494 QPFCSLPNACPLTTRELPGETLRLFTCMECPNNYPWILDPQ 372
QP P C T E+ T+ + P +YP +LDPQ
Sbjct: 289 QPTEGCPTNCRNTCNEVCAPTVASQPSTQAPQSYPVLLDPQ 329
>Z79598-1|CAB01867.3| 586|Caenorhabditis elegans Hypothetical
protein C44H4.1 protein.
Length = 586
Score = 27.9 bits (59), Expect = 5.7
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = -2
Query: 195 PMVTVHTCSSSLSNLIPSPMMYNHYNVSKVSPLQSKL 85
PM+T SS+ +PS ++Y+ K SP+Q KL
Sbjct: 369 PMLTSLDLSSNRLESLPSNVIYDSLMQKKTSPVQRKL 405
>Z92822-4|CAD18893.2| 791|Caenorhabditis elegans Hypothetical
protein ZK520.4c protein.
Length = 791
Score = 27.5 bits (58), Expect = 7.5
Identities = 14/44 (31%), Positives = 26/44 (59%)
Frame = -2
Query: 546 ITP*LPRMXTR*M*RQRSTFLFSAERLSTNN*RVTRRDITSFHL 415
+ P + + T+ M Q ++ +A +LSTN+ T +D+ +FHL
Sbjct: 534 VQPDVKFVPTQTMILQAGSWPLNAPQLSTNSNNQTAQDVANFHL 577
>Z92822-3|CAB07302.3| 774|Caenorhabditis elegans Hypothetical
protein ZK520.4b protein.
Length = 774
Score = 27.5 bits (58), Expect = 7.5
Identities = 14/44 (31%), Positives = 26/44 (59%)
Frame = -2
Query: 546 ITP*LPRMXTR*M*RQRSTFLFSAERLSTNN*RVTRRDITSFHL 415
+ P + + T+ M Q ++ +A +LSTN+ T +D+ +FHL
Sbjct: 517 VQPDVKFVPTQTMILQAGSWPLNAPQLSTNSNNQTAQDVANFHL 560
>Z92822-2|CAB70188.2| 850|Caenorhabditis elegans Hypothetical
protein ZK520.4a protein.
Length = 850
Score = 27.5 bits (58), Expect = 7.5
Identities = 14/44 (31%), Positives = 26/44 (59%)
Frame = -2
Query: 546 ITP*LPRMXTR*M*RQRSTFLFSAERLSTNN*RVTRRDITSFHL 415
+ P + + T+ M Q ++ +A +LSTN+ T +D+ +FHL
Sbjct: 593 VQPDVKFVPTQTMILQAGSWPLNAPQLSTNSNNQTAQDVANFHL 636
>Z83216-12|CAB05675.2| 323|Caenorhabditis elegans Hypothetical
protein C08F11.4 protein.
Length = 323
Score = 27.1 bits (57), Expect = 9.9
Identities = 21/61 (34%), Positives = 31/61 (50%), Gaps = 9/61 (14%)
Frame = -3
Query: 308 NKYSIILSIIT--LQHVILFXRRKLSVL--SNIIFPXNYLKIR-----WLQYIHVVHHYL 156
N Y +IL IIT L + + +++L ++IIFP NY KI WL I + +
Sbjct: 105 NGYLVILIIITFYLNYATMLFPCLVALLRLNSIIFPSNYQKINARILDWLPLIFIYPFFF 164
Query: 155 T 153
T
Sbjct: 165 T 165
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,425,070
Number of Sequences: 27780
Number of extensions: 242222
Number of successful extensions: 526
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 518
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 523
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1237082886
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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