Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_pT_D18
         (676 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0561 + 19485218-19485242,19485323-19486467,19487354-194874...    30   1.9  
08_02_1170 + 24876197-24877070,24877563-24877606,24877805-248779...    29   3.4  
05_01_0346 - 2710420-2710683,2711595-2711672,2711861-2711888,271...    28   5.9  

>07_03_0561 +
           19485218-19485242,19485323-19486467,19487354-19487476,
           19487553-19487626,19487886-19487946,19488285-19488370,
           19488795-19488864,19489026-19489122,19489342-19489481,
           19490225-19490308,19490313-19490346,19491833-19491951
          Length = 685

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = +3

Query: 558 AAPPFKPKRITASRQK*AGGGGTYP 632
           A PP +PKR+   R+K AGG G  P
Sbjct: 82  APPPPQPKRLQGGRKKGAGGHGKLP 106


>08_02_1170 +
           24876197-24877070,24877563-24877606,24877805-24877900,
           24877999-24878544
          Length = 519

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 10/34 (29%), Positives = 21/34 (61%)
 Frame = -1

Query: 598 REAVMRFGLKGGAAVVTIWVAHLCCRCL*LPVTT 497
           R +++  G+ G  A+V++W+ +  C  + +PV T
Sbjct: 140 RPSLLLLGVTGTTALVSMWIHNTACTVMMMPVAT 173


>05_01_0346 -
           2710420-2710683,2711595-2711672,2711861-2711888,
           2711973-2712022,2712112-2712165,2712240-2712281,
           2712583-2712646,2713831-2713851,2714310-2714479,
           2714746-2714910
          Length = 311

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 3/32 (9%)
 Frame = -1

Query: 286 LYHFNLKLCCQL---IEVGSCNCTFYYKTDLI 200
           L+HF+LKL CQL   +E+  C   F  K   +
Sbjct: 241 LHHFHLKLSCQLGKKLEMEHCQVRFLIKNSFV 272


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,012,425
Number of Sequences: 37544
Number of extensions: 382214
Number of successful extensions: 916
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 895
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 916
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1714968940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)