Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_pT_D18
         (676 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U39743-1|AAA80436.2|  314|Caenorhabditis elegans Hypothetical pr...    29   4.0  
U29097-9|AAA68416.2|  343|Caenorhabditis elegans Hypothetical pr...    29   4.0  
AF067947-2|AAC19229.2|  273|Caenorhabditis elegans Hypothetical ...    29   4.0  
AF067947-1|AAC19233.1|  273|Caenorhabditis elegans Hypothetical ...    29   4.0  
AC006834-8|AAF40006.1|  865|Caenorhabditis elegans Hypothetical ...    28   5.3  
Z95309-1|CAB08559.2|  446|Caenorhabditis elegans Hypothetical pr...    28   7.0  

>U39743-1|AAA80436.2|  314|Caenorhabditis elegans Hypothetical
           protein R173.2 protein.
          Length = 314

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
 Frame = -3

Query: 374 PEMKH*NFSIVVWG-WRDWFYFVARRVDSFFISFQFEALLST 252
           P +KH   S++VWG +        RR+ S    FQ+E +L T
Sbjct: 158 PTVKHGGGSVMVWGCFTSTSMGPLRRIQSIMDRFQYENILET 199


>U29097-9|AAA68416.2|  343|Caenorhabditis elegans Hypothetical
           protein F18C5.7 protein.
          Length = 343

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
 Frame = -3

Query: 374 PEMKH*NFSIVVWG-WRDWFYFVARRVDSFFISFQFEALLST 252
           P +KH   S++VWG +        RR+ S    FQ+E +L T
Sbjct: 187 PTVKHGGGSVMVWGCFTSTSMGPLRRIQSIMDRFQYENILET 228


>AF067947-2|AAC19229.2|  273|Caenorhabditis elegans Hypothetical
           protein T10B5.9 protein.
          Length = 273

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
 Frame = -3

Query: 374 PEMKH*NFSIVVWG-WRDWFYFVARRVDSFFISFQFEALLST 252
           P +KH   S++VWG +        RR+ S    FQ+E +L T
Sbjct: 117 PTVKHGGGSVMVWGCFTSTSMGPLRRIQSIMDRFQYENILET 158


>AF067947-1|AAC19233.1|  273|Caenorhabditis elegans Hypothetical
           protein T10B5.1 protein.
          Length = 273

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
 Frame = -3

Query: 374 PEMKH*NFSIVVWG-WRDWFYFVARRVDSFFISFQFEALLST 252
           P +KH   S++VWG +        RR+ S    FQ+E +L T
Sbjct: 117 PTVKHGGGSVMVWGCFTSTSMGPLRRIQSIMDRFQYENILET 158


>AC006834-8|AAF40006.1|  865|Caenorhabditis elegans Hypothetical
           protein ZK973.2 protein.
          Length = 865

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +2

Query: 287 KKNPRDGQRNKTNLSTPTPQY*SSNVSSQ 373
           +K PR G++ +   ST  PQ  S ++SSQ
Sbjct: 214 QKKPRGGKKKEAEASTSVPQASSPDISSQ 242


>Z95309-1|CAB08559.2|  446|Caenorhabditis elegans Hypothetical
           protein H36L18.1 protein.
          Length = 446

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = +1

Query: 31  NPSLYYKSSGRPAYFVFKKKTTYLTEFELNLFSYRKKY 144
           N +LYY   G+P +F   ++ +Y  E    L SY  +Y
Sbjct: 279 NAALYYHEDGKPYFFKSMQRESYRIELFTILESYFWQY 316


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,217,544
Number of Sequences: 27780
Number of extensions: 319248
Number of successful extensions: 674
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 640
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 670
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1529108810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)