Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P04_pT_D17
(388 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z50109-2|CAA90434.1| 105|Caenorhabditis elegans Hypothetical pr... 79 8e-16
AF304121-1|AAG50234.1| 105|Caenorhabditis elegans 60S ribosomal... 79 8e-16
Z47812-3|CAA87790.1| 158|Caenorhabditis elegans Hypothetical pr... 33 0.070
Z83125-4|CAB05616.1| 376|Caenorhabditis elegans Hypothetical pr... 28 2.6
Z74040-3|CAB54276.3| 246|Caenorhabditis elegans Hypothetical pr... 27 4.6
Z74040-2|CAA98513.1| 287|Caenorhabditis elegans Hypothetical pr... 27 4.6
Z74040-1|CAA98514.2| 340|Caenorhabditis elegans Hypothetical pr... 27 4.6
AF026201-1|AAB71239.1| 113|Caenorhabditis elegans Hypothetical ... 27 4.6
Z83319-2|CAB05904.2| 433|Caenorhabditis elegans Hypothetical pr... 27 6.1
Z81497-1|CAB04077.1| 1081|Caenorhabditis elegans Hypothetical pr... 27 6.1
U39850-12|AAZ32806.1| 1336|Caenorhabditis elegans Hypothetical p... 27 6.1
U39850-11|AAZ32807.1| 1331|Caenorhabditis elegans Hypothetical p... 27 6.1
AY008141-1|AAG32094.1| 375|Caenorhabditis elegans heterotrimeri... 27 6.1
AF039715-1|AAB96733.2| 375|Caenorhabditis elegans G protein, su... 27 6.1
AB003487-1|BAA22402.1| 375|Caenorhabditis elegans G protein alp... 27 6.1
AB003486-1|BAA22401.1| 375|Caenorhabditis elegans G protein a(s... 27 6.1
U23455-6|AAC46536.2| 518|Caenorhabditis elegans Hypothetical pr... 26 8.1
>Z50109-2|CAA90434.1| 105|Caenorhabditis elegans Hypothetical
protein C09H10.2 protein.
Length = 105
Score = 79.4 bits (187), Expect = 8e-16
Identities = 41/75 (54%), Positives = 47/75 (62%), Gaps = 1/75 (1%)
Frame = -1
Query: 322 MVNVPKQRRTYXXXXXXXXXXXV-SQYKKSKERHAAQGRRRYDRKQQGYGGQSKPIFXXX 146
MVNVPK RRT+ +QYKK KE AQGRRRYDRKQ G+GGQ+KPIF
Sbjct: 1 MVNVPKARRTFCDGKCRKHTNHKVTQYKKGKESKFAQGRRRYDRKQSGFGGQTKPIFRKK 60
Query: 145 XXXXXKIVLRLECAD 101
KIVLR+EC +
Sbjct: 61 AKTTKKIVLRMECTE 75
Score = 49.2 bits (112), Expect = 1e-06
Identities = 21/50 (42%), Positives = 32/50 (64%)
Frame = -2
Query: 162 PSSKRRQKPLRKLCSVLSVQIXKVRSQVALKRCKHFELGGDKKRKGQMIQ 13
P +++ K +K+ + K + Q+ +KRCKHFELGG KK +GQ+IQ
Sbjct: 55 PIFRKKAKTTKKIVLRMECTECKHKKQLPIKRCKHFELGGQKKSRGQVIQ 104
>AF304121-1|AAG50234.1| 105|Caenorhabditis elegans 60S ribosomal
protein L44 L41 protein.
Length = 105
Score = 79.4 bits (187), Expect = 8e-16
Identities = 41/75 (54%), Positives = 47/75 (62%), Gaps = 1/75 (1%)
Frame = -1
Query: 322 MVNVPKQRRTYXXXXXXXXXXXV-SQYKKSKERHAAQGRRRYDRKQQGYGGQSKPIFXXX 146
MVNVPK RRT+ +QYKK KE AQGRRRYDRKQ G+GGQ+KPIF
Sbjct: 1 MVNVPKARRTFCDGKCRKHTNHKVTQYKKGKESKFAQGRRRYDRKQSGFGGQTKPIFRKK 60
Query: 145 XXXXXKIVLRLECAD 101
KIVLR+EC +
Sbjct: 61 AKTTKKIVLRMECTE 75
Score = 49.2 bits (112), Expect = 1e-06
Identities = 21/50 (42%), Positives = 32/50 (64%)
Frame = -2
Query: 162 PSSKRRQKPLRKLCSVLSVQIXKVRSQVALKRCKHFELGGDKKRKGQMIQ 13
P +++ K +K+ + K + Q+ +KRCKHFELGG KK +GQ+IQ
Sbjct: 55 PIFRKKAKTTKKIVLRMECTECKHKKQLPIKRCKHFELGGQKKSRGQVIQ 104
>Z47812-3|CAA87790.1| 158|Caenorhabditis elegans Hypothetical
protein T05H10.3 protein.
Length = 158
Score = 33.1 bits (72), Expect = 0.070
Identities = 14/41 (34%), Positives = 21/41 (51%)
Frame = +3
Query: 246 YCDTLCTLWHLHFLQYVLRCFGTFTIFEFVRHDINKRQKEH 368
YCD +C H F+ Y+ + G F F+ + + KR EH
Sbjct: 74 YCDIVCPKSHTVFISYIDQ--GHRACFNFITYQVEKRNDEH 112
>Z83125-4|CAB05616.1| 376|Caenorhabditis elegans Hypothetical
protein T15D6.5 protein.
Length = 376
Score = 27.9 bits (59), Expect = 2.6
Identities = 18/62 (29%), Positives = 30/62 (48%)
Frame = -2
Query: 312 YQNSAGRTAKNVNATKYTRYHSTKSPRKGTLPRVEDVMIVNSRVTVVSPNPSSKRRQKPL 133
Y +AGRT + + + KS R LP++++ + +V+ P S R+K L
Sbjct: 86 YSTTAGRTRDFGSRFRVSFADIQKSQRWLHLPKIKNPTWNRDILMIVASRPGSVSRRKVL 145
Query: 132 RK 127
RK
Sbjct: 146 RK 147
>Z74040-3|CAB54276.3| 246|Caenorhabditis elegans Hypothetical
protein K10D6.2c protein.
Length = 246
Score = 27.1 bits (57), Expect = 4.6
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = +2
Query: 62 LHLFNATCDLTLXICTLKTEHNFLSG 139
LHL C + +CTL T + F++G
Sbjct: 193 LHLMGTLCWIGAFVCTLLTTYKFVTG 218
>Z74040-2|CAA98513.1| 287|Caenorhabditis elegans Hypothetical
protein K10D6.2b protein.
Length = 287
Score = 27.1 bits (57), Expect = 4.6
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = +2
Query: 62 LHLFNATCDLTLXICTLKTEHNFLSG 139
LHL C + +CTL T + F++G
Sbjct: 193 LHLMGTLCWIGAFVCTLLTTYKFVTG 218
>Z74040-1|CAA98514.2| 340|Caenorhabditis elegans Hypothetical
protein K10D6.2a protein.
Length = 340
Score = 27.1 bits (57), Expect = 4.6
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = +2
Query: 62 LHLFNATCDLTLXICTLKTEHNFLSG 139
LHL C + +CTL T + F++G
Sbjct: 193 LHLMGTLCWIGAFVCTLLTTYKFVTG 218
>AF026201-1|AAB71239.1| 113|Caenorhabditis elegans Hypothetical
protein D1079.1 protein.
Length = 113
Score = 27.1 bits (57), Expect = 4.6
Identities = 17/49 (34%), Positives = 28/49 (57%), Gaps = 3/49 (6%)
Frame = +1
Query: 220 QRAFPW-TFCTVIPCVLCGIYIFC--STSCAVLVRSPFLSSFGTISTNV 357
QR++P+ TF + +LC +YI C S +V + FL +F + +NV
Sbjct: 30 QRSYPFQTFLAFLDFMLCALYIHCFGLLSISVEYKIAFLYNF-VMDSNV 77
>Z83319-2|CAB05904.2| 433|Caenorhabditis elegans Hypothetical
protein T02D1.6 protein.
Length = 433
Score = 26.6 bits (56), Expect = 6.1
Identities = 14/47 (29%), Positives = 20/47 (42%)
Frame = +1
Query: 172 DHRNPAVYDHNVFYPGQRAFPWTFCTVIPCVLCGIYIFCSTSCAVLV 312
+H V+ NV+ P Q P V+ VLC I C S + +
Sbjct: 38 NHTGGPVWVRNVYPPIQELQPKVLIVVVVFVLCFIVGVCGNSSIITI 84
>Z81497-1|CAB04077.1| 1081|Caenorhabditis elegans Hypothetical
protein F10C2.4 protein.
Length = 1081
Score = 26.6 bits (56), Expect = 6.1
Identities = 11/26 (42%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
Frame = -2
Query: 258 RYHSTKSPRKGTLPRV-EDVMIVNSR 184
+Y +TKS R+G LP + ED++ R
Sbjct: 612 QYFATKSKRRGLLPEILEDILAARKR 637
>U39850-12|AAZ32806.1| 1336|Caenorhabditis elegans Hypothetical
protein F52C9.1a protein.
Length = 1336
Score = 26.6 bits (56), Expect = 6.1
Identities = 10/32 (31%), Positives = 17/32 (53%)
Frame = +3
Query: 234 LDFLYCDTLCTLWHLHFLQYVLRCFGTFTIFE 329
++ + C+T L FL +V C+GT T +
Sbjct: 736 IELIQCETSVKLLDRRFLMHVSICYGTHTFLD 767
>U39850-11|AAZ32807.1| 1331|Caenorhabditis elegans Hypothetical
protein F52C9.1b protein.
Length = 1331
Score = 26.6 bits (56), Expect = 6.1
Identities = 10/32 (31%), Positives = 17/32 (53%)
Frame = +3
Query: 234 LDFLYCDTLCTLWHLHFLQYVLRCFGTFTIFE 329
++ + C+T L FL +V C+GT T +
Sbjct: 736 IELIQCETSVKLLDRRFLMHVSICYGTHTFLD 767
>AY008141-1|AAG32094.1| 375|Caenorhabditis elegans heterotrimeric G
protein alphasubunit protein.
Length = 375
Score = 26.6 bits (56), Expect = 6.1
Identities = 17/58 (29%), Positives = 28/58 (48%)
Frame = -2
Query: 186 RVTVVSPNPSSKRRQKPLRKLCSVLSVQIXKVRSQVALKRCKHFELGGDKKRKGQMIQ 13
+V VV N Q LR C V++ I + + +V R F++GG + + + IQ
Sbjct: 162 KVDVVRQNNYDPSEQDILR--CRVMTTGIFETKFEVDKVRFHMFDVGGQRDERRKWIQ 217
>AF039715-1|AAB96733.2| 375|Caenorhabditis elegans G protein,
subunit alpha protein 1 protein.
Length = 375
Score = 26.6 bits (56), Expect = 6.1
Identities = 17/58 (29%), Positives = 28/58 (48%)
Frame = -2
Query: 186 RVTVVSPNPSSKRRQKPLRKLCSVLSVQIXKVRSQVALKRCKHFELGGDKKRKGQMIQ 13
+V VV N Q LR C V++ I + + +V R F++GG + + + IQ
Sbjct: 162 KVDVVRQNNYDPSEQDILR--CRVMTTGIFETKFEVDKVRFHMFDVGGQRDERRKWIQ 217
>AB003487-1|BAA22402.1| 375|Caenorhabditis elegans G protein alpha
subunit protein.
Length = 375
Score = 26.6 bits (56), Expect = 6.1
Identities = 17/58 (29%), Positives = 28/58 (48%)
Frame = -2
Query: 186 RVTVVSPNPSSKRRQKPLRKLCSVLSVQIXKVRSQVALKRCKHFELGGDKKRKGQMIQ 13
+V VV N Q LR C V++ I + + +V R F++GG + + + IQ
Sbjct: 162 KVDVVRQNNYDPSEQDILR--CRVMTTGIFETKFEVDKVRFHMFDVGGQRDERRKWIQ 217
>AB003486-1|BAA22401.1| 375|Caenorhabditis elegans G protein a(s)
subunit protein.
Length = 375
Score = 26.6 bits (56), Expect = 6.1
Identities = 17/58 (29%), Positives = 28/58 (48%)
Frame = -2
Query: 186 RVTVVSPNPSSKRRQKPLRKLCSVLSVQIXKVRSQVALKRCKHFELGGDKKRKGQMIQ 13
+V VV N Q LR C V++ I + + +V R F++GG + + + IQ
Sbjct: 162 KVDVVRQNNYDPSEQDILR--CRVMTTGIFETKFEVDKVRFHMFDVGGQRDERRKWIQ 217
>U23455-6|AAC46536.2| 518|Caenorhabditis elegans Hypothetical
protein F55E10.7 protein.
Length = 518
Score = 26.2 bits (55), Expect = 8.1
Identities = 12/41 (29%), Positives = 20/41 (48%)
Frame = +1
Query: 253 IPCVLCGIYIFCSTSCAVLVRSPFLSSFGTISTNVKKSIGR 375
I C L ++I C+ A+L + + F T+ S+GR
Sbjct: 221 IVCYLVPLFIICAVYLAILHKLFIHTRFSTVGKKTSISLGR 261
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,596,966
Number of Sequences: 27780
Number of extensions: 167671
Number of successful extensions: 577
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 547
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 575
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 576961812
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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