Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P04_pT_D16
(745 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC14C8.06 |arc1|sop2|ARP2/3 actin-organizing complex subunit S... 47 3e-06
SPAC26H5.03 |||WD repeat protein Cac2|Schizosaccharomyces pombe|... 29 0.92
SPAC6B12.15 |cpc2|rkp1|RACK1 homologue Cpc2|Schizosaccharomyces ... 28 1.6
SPBP8B7.27 |mug30||ubiquitin-protein ligase E3|Schizosaccharomyc... 27 2.8
SPBC16A3.05c |rae1||RNA export factor Rae1|Schizosaccharomyces p... 26 4.9
SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces p... 26 4.9
SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase Prp16|... 25 8.6
SPBC887.19 |rft1||human RFT1 ortholog |Schizosaccharomyces pombe... 25 8.6
SPCC777.13 |vps35||retromer complex subunit Vps35|Schizosaccharo... 25 8.6
>SPBC14C8.06 |arc1|sop2|ARP2/3 actin-organizing complex subunit
Sop2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 377
Score = 46.8 bits (106), Expect = 3e-06
Identities = 34/127 (26%), Positives = 63/127 (49%), Gaps = 17/127 (13%)
Frame = -2
Query: 741 LPFLGCSWITXNSLIVAGHSCIPLL-------YCHDGDDIKYVAKLDNTQ-------RKE 604
LP W ++++ AG++ P+L + H D +K T R+E
Sbjct: 252 LPLRSLLWANESAIVAAGYNYSPILLQGNESGWAHTRDLDAGTSKTSFTHTGNTGEGREE 311
Query: 603 SGGLS--AMKK-FQSLDRHARIETSDTFLDSIHQNAISCINIYKGTKSHTNKFSTSGLDG 433
G +S A++ F+++D ++ + L ++HQN I+ + Y GT + F++SG DG
Sbjct: 312 EGPVSFTALRSTFRNMDLKGSSQSISS-LPTVHQNMIATLRPYAGTPGNITAFTSSGTDG 370
Query: 432 QLVIWDL 412
++V+W L
Sbjct: 371 RVVLWTL 377
>SPAC26H5.03 |||WD repeat protein Cac2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 512
Score = 28.7 bits (61), Expect = 0.92
Identities = 13/27 (48%), Positives = 17/27 (62%)
Frame = -2
Query: 474 KSHTNKFSTSGLDGQLVIWDLDTLERS 394
K+ NKF+T G D ++ IW L T E S
Sbjct: 28 KNSLNKFATCGGDSKIRIWQLITSESS 54
>SPAC6B12.15 |cpc2|rkp1|RACK1 homologue Cpc2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 314
Score = 27.9 bits (59), Expect = 1.6
Identities = 13/43 (30%), Positives = 22/43 (51%)
Frame = -2
Query: 534 TFLDSIHQNAISCINIYKGTKSHTNKFSTSGLDGQLVIWDLDT 406
T D H + +SC+ + T F ++G D + +WDL+T
Sbjct: 141 TITDGGHSDWVSCVRFSPNPDNLT--FVSAGWDKAVKVWDLET 181
>SPBP8B7.27 |mug30||ubiquitin-protein ligase E3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 807
Score = 27.1 bits (57), Expect = 2.8
Identities = 20/73 (27%), Positives = 31/73 (42%), Gaps = 2/73 (2%)
Frame = -2
Query: 708 NSLIVAGHSCI--PLLYCHDGDDIKYVAKLDNTQRKESGGLSAMKKFQSLDRHARIETSD 535
N L+ A S + P+LYCHD D +Y+ L S + + K S+ + +
Sbjct: 219 NELLRAIESLLRRPMLYCHDPADYQYLLILLENPLLNSKSKNIVNKSSSILKRI-LGVLS 277
Query: 534 TFLDSIHQNAISC 496
+ H ISC
Sbjct: 278 NLNEKTHHFFISC 290
>SPBC16A3.05c |rae1||RNA export factor Rae1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 352
Score = 26.2 bits (55), Expect = 4.9
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = -2
Query: 456 FSTSGLDGQLVIWDLDTLER 397
FST+G DG WD D+ +R
Sbjct: 269 FSTAGSDGTFSFWDKDSHQR 288
>SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 932
Score = 26.2 bits (55), Expect = 4.9
Identities = 15/48 (31%), Positives = 25/48 (52%)
Frame = -2
Query: 531 FLDSIHQNAISCINIYKGTKSHTNKFSTSGLDGQLVIWDLDTLERSFE 388
F D H+ +I I+I+ ++ +T GLDG + IW + + R E
Sbjct: 12 FDDRGHRLSIFSIHIHPDG----SRIATGGLDGTIRIWSTEAINRENE 55
>SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase
Prp16|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1173
Score = 25.4 bits (53), Expect = 8.6
Identities = 15/39 (38%), Positives = 22/39 (56%)
Frame = +1
Query: 448 STELVSVRFSSFVNIDARDSVLVYRVQERIAGLDTSMTI 564
STE S +F DSVL+Y + + I GL+T++ I
Sbjct: 45 STEF-SNALHTFGRFSDNDSVLIYDLCKSIIGLETNLGI 82
>SPBC887.19 |rft1||human RFT1 ortholog |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 527
Score = 25.4 bits (53), Expect = 8.6
Identities = 9/31 (29%), Positives = 19/31 (61%)
Frame = -3
Query: 359 YTLFYLFIYAINNQFETSSEVTQQIYKWRKR 267
Y+ +FIY +++ E SE ++ +WR++
Sbjct: 132 YSKTCIFIYTVSSFIELLSEPYYEVLQWRQK 162
>SPCC777.13 |vps35||retromer complex subunit
Vps35|Schizosaccharomyces pombe|chr 3|||Manual
Length = 785
Score = 25.4 bits (53), Expect = 8.6
Identities = 9/22 (40%), Positives = 15/22 (68%)
Frame = +1
Query: 154 IVCSVYLKVLNFYELNSLWIAL 219
++ SV V+NF E+N LW+ +
Sbjct: 126 VLDSVKFLVINFTEMNKLWVRI 147
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,867,111
Number of Sequences: 5004
Number of extensions: 57138
Number of successful extensions: 182
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 172
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 181
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 353266144
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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