Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_pT_D16
         (745 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0418 - 3304741-3304904,3305579-3305762,3307254-3307347,330...    30   1.7  
06_03_0788 - 24603849-24603949,24604030-24604123,24604206-246044...    30   2.2  
09_04_0480 + 17958726-17958926,17959294-17959382,17960176-179602...    29   2.9  
10_06_0113 - 10903419-10903439,10904452-10904726,10905082-109052...    29   3.9  

>12_01_0418 -
           3304741-3304904,3305579-3305762,3307254-3307347,
           3308530-3308882,3309140-3309274,3309354-3309392,
           3309587-3309652,3309739-3309834,3310291-3310527,
           3310602-3310722,3310854-3310889,3313062-3313159,
           3313298-3313591,3313842-3313904,3314280-3314438,
           3314557-3314655
          Length = 745

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 14/38 (36%), Positives = 23/38 (60%)
 Frame = -2

Query: 519 IHQNAISCINIYKGTKSHTNKFSTSGLDGQLVIWDLDT 406
           + QN +SC +    T   +N  ++ GL G++ IWDLD+
Sbjct: 93  VGQNLVSCSS---DTTLKSNIVASGGLGGEVFIWDLDS 127


>06_03_0788 -
           24603849-24603949,24604030-24604123,24604206-24604413,
           24604727-24604839,24605679-24605816,24605916-24605999,
           24606517-24606675,24606754-24606837,24607505-24607840,
           24607941-24608042,24608970-24609153,24609699-24610044,
           24610444-24610591,24611053-24611203,24611786-24611867,
           24612314-24612362
          Length = 792

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = -2

Query: 657 DGDDIKYVAKLDNTQRKESGGLSAMKKFQSLDRH 556
           D  D+K ++ + N +RK S G  +M K  S D+H
Sbjct: 726 DVKDVKLISTVVNKKRKSSNGTRSMDKNNSEDKH 759


>09_04_0480 +
           17958726-17958926,17959294-17959382,17960176-17960242,
           17960329-17960444,17960978-17961044,17961158-17961206,
           17961630-17961715,17961825-17962078,17962158-17962213,
           17962683-17962768,17963047-17963139,17963790-17964219,
           17964338-17964861,17964962-17965190,17965271-17965566
          Length = 880

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = +1

Query: 553 SMTIQGLELLHSRQSPGLLPLSVVEFGDV 639
           S T Q LE++H    PG+LP ++V   DV
Sbjct: 203 SKTFQLLEMIHQSTKPGMLPNALVVANDV 231


>10_06_0113 -
           10903419-10903439,10904452-10904726,10905082-10905247,
           10905622-10905766,10905837-10905896,10905979-10906028
          Length = 238

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 20/79 (25%), Positives = 32/79 (40%), Gaps = 1/79 (1%)
 Frame = -2

Query: 729 GCSWITXNSLIVAGHSC-IPLLYCHDGDDIKYVAKLDNTQRKESGGLSAMKKFQSLDRHA 553
           G  W    SL   G  C  P++Y  +  +     K+       +GG+S+M+     D H 
Sbjct: 51  GFHWDHRKSLNYVGKRCGNPMIYATENSNASVPPKMTTF----AGGVSSMQAHGPTDHHI 106

Query: 552 RIETSDTFLDSIHQNAISC 496
                D F  S++Q +  C
Sbjct: 107 HPPFKDGFGPSMNQTSFFC 125


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,103,350
Number of Sequences: 37544
Number of extensions: 318995
Number of successful extensions: 727
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 710
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 727
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1968901276
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)