Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P04_pT_D16
(745 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL110501-4|CAB54510.1| 368|Caenorhabditis elegans Hypothetical ... 89 3e-18
U23139-7|AAK31492.1| 929|Caenorhabditis elegans Hypothetical pr... 32 0.37
AL132904-13|CAC35846.4| 778|Caenorhabditis elegans Hypothetical... 29 3.5
AF045642-2|AAC02580.1| 643|Caenorhabditis elegans Dynein chain,... 29 3.5
AF067944-4|AAC17670.2| 279|Caenorhabditis elegans Hypothetical ... 29 4.6
Z68227-4|CAA92518.1| 480|Caenorhabditis elegans Hypothetical pr... 28 6.1
Z68227-3|CAA92519.1| 507|Caenorhabditis elegans Hypothetical pr... 28 6.1
Z83319-1|CAB05908.1| 322|Caenorhabditis elegans Hypothetical pr... 28 8.0
Z77653-3|CAB01126.1| 462|Caenorhabditis elegans Hypothetical pr... 28 8.0
Z75551-5|CAA99935.1| 462|Caenorhabditis elegans Hypothetical pr... 28 8.0
Z74042-17|CAA98537.1| 688|Caenorhabditis elegans Hypothetical p... 28 8.0
AL031623-1|CAA20938.1| 688|Caenorhabditis elegans Hypothetical ... 28 8.0
AC006648-5|AAF39853.1| 701|Caenorhabditis elegans Hypothetical ... 28 8.0
>AL110501-4|CAB54510.1| 368|Caenorhabditis elegans Hypothetical
protein Y79H2A.6 protein.
Length = 368
Score = 89.0 bits (211), Expect = 3e-18
Identities = 44/112 (39%), Positives = 67/112 (59%), Gaps = 1/112 (0%)
Frame = -2
Query: 744 YLPFLGCSWITXNSLIVAGHSCIPLLYCHDGDDIKYVAKLDNTQRKESGGL-SAMKKFQS 568
+LPF WIT NS++ AGH C P+L+ D +K V KLD +S + SA++ F++
Sbjct: 250 HLPFTTVEWITENSVVTAGHDCSPVLFVVSQDVLKEVCKLDVPSAAKSSTVNSALQLFKN 309
Query: 567 LDRHARIETSDTFLDSIHQNAISCINIYKGTKSHTNKFSTSGLDGQLVIWDL 412
+DR+ E + L ++HQN I+ I + GT + KF+T G DG + +WDL
Sbjct: 310 IDRNNAAEKINVALKTLHQNRITQILPHSGTVGNVVKFTTCGTDGIVALWDL 361
>U23139-7|AAK31492.1| 929|Caenorhabditis elegans Hypothetical
protein F13H8.2 protein.
Length = 929
Score = 32.3 bits (70), Expect = 0.37
Identities = 16/45 (35%), Positives = 25/45 (55%)
Frame = -2
Query: 546 ETSDTFLDSIHQNAISCINIYKGTKSHTNKFSTSGLDGQLVIWDL 412
E S+ + S H+ A++CI S F+T G DG +V+WD+
Sbjct: 92 EDSEPIMFSGHKKAVNCIEF----SSDGLLFATGGKDGVIVLWDI 132
>AL132904-13|CAC35846.4| 778|Caenorhabditis elegans Hypothetical
protein Y111B2A.17 protein.
Length = 778
Score = 29.1 bits (62), Expect = 3.5
Identities = 11/35 (31%), Positives = 21/35 (60%)
Frame = -2
Query: 516 HQNAISCINIYKGTKSHTNKFSTSGLDGQLVIWDL 412
HQ I+ + K ++ ++F T G+D ++V+W L
Sbjct: 59 HQKPITVLKRLKSSEIVADEFVTGGVDSRVVLWKL 93
>AF045642-2|AAC02580.1| 643|Caenorhabditis elegans Dynein chain,
light intermediateprotein 1 protein.
Length = 643
Score = 29.1 bits (62), Expect = 3.5
Identities = 15/44 (34%), Positives = 25/44 (56%)
Frame = -2
Query: 516 HQNAISCINIYKGTKSHTNKFSTSGLDGQLVIWDLDTLERSFEG 385
H +SC+ + GTK+ N S S DG++ W++D L + +G
Sbjct: 384 HTYTVSCLAVV-GTKNAHNFVSLSR-DGRICSWNVDNLTQPVDG 425
>AF067944-4|AAC17670.2| 279|Caenorhabditis elegans Hypothetical
protein K10C9.3 protein.
Length = 279
Score = 28.7 bits (61), Expect = 4.6
Identities = 10/17 (58%), Positives = 12/17 (70%)
Frame = -2
Query: 684 SCIPLLYCHDGDDIKYV 634
SCIPL Y HDG+ Y+
Sbjct: 10 SCIPLAYSHDGEPFDYL 26
>Z68227-4|CAA92518.1| 480|Caenorhabditis elegans Hypothetical
protein F49C12.5b protein.
Length = 480
Score = 28.3 bits (60), Expect = 6.1
Identities = 15/47 (31%), Positives = 23/47 (48%)
Frame = -2
Query: 579 KFQSLDRHARIETSDTFLDSIHQNAISCINIYKGTKSHTNKFSTSGL 439
K SL R + TS F+ QN + ++IYK +H N + S +
Sbjct: 122 KPSSLKRDVVVCTSPLFVSEQWQNFLFAVHIYKKFDAHMNLYLVSSI 168
>Z68227-3|CAA92519.1| 507|Caenorhabditis elegans Hypothetical
protein F49C12.5a protein.
Length = 507
Score = 28.3 bits (60), Expect = 6.1
Identities = 15/47 (31%), Positives = 23/47 (48%)
Frame = -2
Query: 579 KFQSLDRHARIETSDTFLDSIHQNAISCINIYKGTKSHTNKFSTSGL 439
K SL R + TS F+ QN + ++IYK +H N + S +
Sbjct: 149 KPSSLKRDVVVCTSPLFVSEQWQNFLFAVHIYKKFDAHMNLYLVSSI 195
>Z83319-1|CAB05908.1| 322|Caenorhabditis elegans Hypothetical
protein T02D1.3 protein.
Length = 322
Score = 27.9 bits (59), Expect = 8.0
Identities = 11/40 (27%), Positives = 22/40 (55%)
Frame = -1
Query: 229 KNKSKQSRVNSARKNLKLSNIQNKQ*IIDTTCFIIIHFFY 110
+NK K ++ A ++L L+ + I+ F++I+ FY
Sbjct: 233 RNKQKSKKLQRAERSLTLTTVSMLSAHINNLIFVMIYMFY 272
>Z77653-3|CAB01126.1| 462|Caenorhabditis elegans Hypothetical
protein T28H10.3 protein.
Length = 462
Score = 27.9 bits (59), Expect = 8.0
Identities = 18/61 (29%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Frame = -1
Query: 433 PARHMGLGHFGEVI*RNQDCLNKNCIRYFIYLFMQLIISLKR-VPKSLNKYINGESGEYI 257
PAR + L H ++ D L+ N + Y I + ++KR V + K+ +GES + I
Sbjct: 322 PARDIELNHLISQHRKSNDLLSSNKLEYKINRIKETRRAIKRNVHMIVQKFFDGESEDLI 381
Query: 256 A 254
+
Sbjct: 382 S 382
>Z75551-5|CAA99935.1| 462|Caenorhabditis elegans Hypothetical
protein T28H10.3 protein.
Length = 462
Score = 27.9 bits (59), Expect = 8.0
Identities = 18/61 (29%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Frame = -1
Query: 433 PARHMGLGHFGEVI*RNQDCLNKNCIRYFIYLFMQLIISLKR-VPKSLNKYINGESGEYI 257
PAR + L H ++ D L+ N + Y I + ++KR V + K+ +GES + I
Sbjct: 322 PARDIELNHLISQHRKSNDLLSSNKLEYKINRIKETRRAIKRNVHMIVQKFFDGESEDLI 381
Query: 256 A 254
+
Sbjct: 382 S 382
>Z74042-17|CAA98537.1| 688|Caenorhabditis elegans Hypothetical
protein T11F9.12 protein.
Length = 688
Score = 27.9 bits (59), Expect = 8.0
Identities = 20/61 (32%), Positives = 28/61 (45%)
Frame = -3
Query: 692 QATAAFRYCTATTVTILSTSPNSTTLRGRSPGDCLL*RSSSPWIVMLVSRPAIRSWTRYT 513
Q T R +A+T T+ +T P +TT P + SSS + IR+WT T
Sbjct: 113 QTTTTLRTTSAST-TLSTTQPQTTTTT-TIPSTTTMTESSSTSTTASPTTTRIRTWTYTT 170
Query: 512 R 510
R
Sbjct: 171 R 171
>AL031623-1|CAA20938.1| 688|Caenorhabditis elegans Hypothetical
protein T11F9.12 protein.
Length = 688
Score = 27.9 bits (59), Expect = 8.0
Identities = 20/61 (32%), Positives = 28/61 (45%)
Frame = -3
Query: 692 QATAAFRYCTATTVTILSTSPNSTTLRGRSPGDCLL*RSSSPWIVMLVSRPAIRSWTRYT 513
Q T R +A+T T+ +T P +TT P + SSS + IR+WT T
Sbjct: 113 QTTTTLRTTSAST-TLSTTQPQTTTTT-TIPSTTTMTESSSTSTTASPTTTRIRTWTYTT 170
Query: 512 R 510
R
Sbjct: 171 R 171
>AC006648-5|AAF39853.1| 701|Caenorhabditis elegans Hypothetical
protein F59H6.2 protein.
Length = 701
Score = 27.9 bits (59), Expect = 8.0
Identities = 13/38 (34%), Positives = 23/38 (60%)
Frame = -1
Query: 403 GEVI*RNQDCLNKNCIRYFIYLFMQLIISLKRVPKSLN 290
G ++ +Q C+NK C RYF+ Q +SL ++ +L+
Sbjct: 186 GNMLTESQKCVNKKCNRYFL---SQCNVSLSKMAVTLS 220
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,489,331
Number of Sequences: 27780
Number of extensions: 307005
Number of successful extensions: 819
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 783
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 818
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1756472266
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -