Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_pT_D16
         (745 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF205594-1|AAQ13840.1|  156|Apis mellifera acid phosphatase prec...    27   0.14 
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   4.0  
AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier...    22   5.3  
DQ288392-1|ABC41342.1|  120|Apis mellifera nanos protein.              21   9.2  

>AF205594-1|AAQ13840.1|  156|Apis mellifera acid phosphatase
           precursor protein.
          Length = 156

 Score = 27.5 bits (58), Expect = 0.14
 Identities = 10/33 (30%), Positives = 18/33 (54%)
 Frame = -1

Query: 358 IRYFIYLFMQLIISLKRVPKSLNKYINGESGEY 260
           I YFI+L+   ++  +R    L+K +    G+Y
Sbjct: 19  INYFIFLYFNSLVRFRRFTIELDKVLESPRGKY 51


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = +3

Query: 390  QMTSPKCPSPI*RAGRRD 443
            ++TSP  P  I RAG RD
Sbjct: 1393 RLTSPPTPLSISRAGSRD 1410



 Score = 21.8 bits (44), Expect = 7.0
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -3

Query: 665 TATTVTILSTSPNST 621
           T TT T  +T+PN+T
Sbjct: 667 TTTTTTTTTTTPNTT 681


>AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier
           protein JHBP-1 protein.
          Length = 253

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +1

Query: 46  ASCSNLIL*FTKYINCLICQKYKKN 120
           A  SN+ +   K  N + C+KY+KN
Sbjct: 145 AGKSNITMYDLKSHNDIYCEKYEKN 169


>DQ288392-1|ABC41342.1|  120|Apis mellifera nanos protein.
          Length = 120

 Score = 21.4 bits (43), Expect = 9.2
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = -2

Query: 660 HDGDDIKYVAKLDNTQRKES 601
           H+G D +Y   LDN    E+
Sbjct: 6   HNGRDFEYCPDLDNVTMPET 25


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 191,262
Number of Sequences: 438
Number of extensions: 4100
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23266665
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)