Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_pT_D15
         (305 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4G8.12c |||alpha-1,2-mannosyltransferase |Schizosaccharomyce...    28   0.36 
SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyce...    26   1.1  
SPBC1604.01 |mug158|SPBC1677.01c|sulfatase modifying factor 1 re...    25   1.9  
SPAC22G7.04 |ubp13|pan2|poly|Schizosaccharomyces pombe|chr 1|||M...    25   2.5  
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||...    24   5.8  
SPCC548.05c |||ubiquitin-protein ligase E3 |Schizosaccharomyces ...    24   5.8  
SPAP8A3.12c |||tripeptidylpeptidase |Schizosaccharomyces pombe|c...    24   5.8  
SPCC825.05c |||splicing coactivator SRRM1 |Schizosaccharomyces p...    23   7.7  

>SPAC4G8.12c |||alpha-1,2-mannosyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 533

 Score = 27.9 bits (59), Expect = 0.36
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = +2

Query: 176 WLLARSKFLIPNILF*YNYSSKCSLKFFY 262
           W+LAR KF   N    YNYS+K  +  F+
Sbjct: 408 WMLARPKFSQINTSHLYNYSTKQMISKFW 436


>SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1242

 Score = 26.2 bits (55), Expect = 1.1
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = +2

Query: 65  PTTIRLARKIISPLETLFLGGVQITLMFLCWATFLKI 175
           P TI L RK+ S L+   +   ++ L F CW   L +
Sbjct: 73  PFTI-LCRKLASTLKQRVIFFTRVLLTFFCWTVLLPL 108


>SPBC1604.01 |mug158|SPBC1677.01c|sulfatase modifying factor 1
           related|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 773

 Score = 25.4 bits (53), Expect = 1.9
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = +1

Query: 142 HVPLLGDILKDLVVSAK*IPNSKHF 216
           HVP+  DI    +V  K   N KHF
Sbjct: 382 HVPVFNDIYLTKIVKNKATANKKHF 406


>SPAC22G7.04 |ubp13|pan2|poly|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1115

 Score = 25.0 bits (52), Expect = 2.5
 Identities = 12/21 (57%), Positives = 17/21 (80%)
 Frame = -1

Query: 206 ELGIYFALTTKSLRMSPNKGT 144
           E G+ F+L++KSLR+S  KGT
Sbjct: 70  ERGV-FSLSSKSLRLSNRKGT 89


>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 3227

 Score = 23.8 bits (49), Expect = 5.8
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +1

Query: 121  WRSADNAHVPLLGDILKDLVVS 186
            WRSAD+ H+P +   L   V+S
Sbjct: 1114 WRSADDLHLPYITRALLTNVLS 1135


>SPCC548.05c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 468

 Score = 23.8 bits (49), Expect = 5.8
 Identities = 11/36 (30%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
 Frame = +1

Query: 49  WDGRPAHHHQAGEEDHLTSGNLVSWRSADN-AHVPL 153
           WDG  A    +   D+   GN+ + R+ +N  H P+
Sbjct: 226 WDGENAESDSSLNGDNTRGGNISTNRAFNNMGHAPI 261


>SPAP8A3.12c |||tripeptidylpeptidase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1274

 Score = 23.8 bits (49), Expect = 5.8
 Identities = 12/23 (52%), Positives = 13/23 (56%), Gaps = 1/23 (4%)
 Frame = -2

Query: 166 ECRPT-KEHERYLHSAKKQGFQR 101
           +CR     H RYL SAKK G  R
Sbjct: 20  QCRNKYHSHVRYLSSAKKSGILR 42


>SPCC825.05c |||splicing coactivator SRRM1 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 301

 Score = 23.4 bits (48), Expect = 7.7
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = -2

Query: 160 RPTKEHERYLHSAKKQGFQR*DDLPRQPDG 71
           RPT+  ER+  +   +GF   D+  R  DG
Sbjct: 243 RPTRRRERHYRTRDDEGF---DEFGRSRDG 269


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,225,256
Number of Sequences: 5004
Number of extensions: 21807
Number of successful extensions: 49
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 49
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 49
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 77794588
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)