Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P04_pT_D15
(305 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0808 + 11412981-11413259 29 0.95
03_05_0816 + 27928812-27930059,27931007-27931111,27931197-279312... 28 1.3
07_03_0997 - 23203166-23203330,23203627-23203693,23203771-232038... 27 2.2
06_01_1160 - 9868340-9868360,9868639-9868986 27 2.9
03_06_0084 + 31536286-31536718,31536907-31536983,31537380-315374... 27 2.9
03_05_0733 - 27241021-27241767 27 3.8
08_01_0034 - 253972-254916 26 5.1
01_05_0318 - 20826377-20826571,20826663-20826764,20826839-208269... 26 5.1
09_02_0607 - 11183382-11183387,11183481-11183637,11184220-111842... 26 6.7
12_01_0258 - 1900564-1901101,1901838-1902004 25 8.9
04_04_1492 - 33974804-33975040,33975121-33975214,33975351-339757... 25 8.9
04_04_0007 + 22119477-22120004 25 8.9
>03_02_0808 + 11412981-11413259
Length = 92
Score = 28.7 bits (61), Expect = 0.95
Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Frame = -3
Query: 204 IRNLLRAN-NQIFKNVAQQRNMSVICTPPRNKVSRG 100
+R +LR N + +F QQR M + PPR K G
Sbjct: 50 VRKVLRENQDMVFIQQPQQREMGGLIMPPRGKTKLG 85
>03_05_0816 +
27928812-27930059,27931007-27931111,27931197-27931262,
27931337-27931501,27931671-27931745,27931829-27931983,
27932234-27932369,27932454-27932523,27932602-27932729,
27932838-27932894,27933326-27933511,27934031-27934123,
27934488-27934573,27934668-27934734,27934873-27934939,
27935016-27935152,27935618-27935709,27935849-27935915,
27936058-27936078
Length = 1006
Score = 28.3 bits (60), Expect = 1.3
Identities = 10/29 (34%), Positives = 16/29 (55%)
Frame = +1
Query: 1 FSLLVAVMLDVDQHPGWDGRPAHHHQAGE 87
F++L+ ++LDV P W + AGE
Sbjct: 321 FAVLMTMLLDVQDEPAWHAAVSEEEDAGE 349
>07_03_0997 -
23203166-23203330,23203627-23203693,23203771-23203862,
23204820-23204956,23205050-23205116,23205212-23205278,
23205356-23205441,23206061-23206153,23206337-23206522,
23207316-23207372,23207455-23207582,23207662-23207731,
23207815-23207950,23208378-23208529,23208606-23208680,
23208765-23208929,23209063-23209128,23209229-23209333,
23209929-23210132,23210462-23211715
Length = 1123
Score = 27.5 bits (58), Expect = 2.2
Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 4/60 (6%)
Frame = +1
Query: 1 FSLLVAVMLDVDQHPGWDGRPAHHHQAGEEDHLTSGNLVSWRSA----DNAHVPLLGDIL 168
F++L+ ++LDV+ P W AGE ++ R A NA VP+ ++L
Sbjct: 331 FAVLMQMLLDVEDDPAWHTAETEDEDAGEGNNYGVAQECLDRLAIAIGGNAIVPIASELL 390
>06_01_1160 - 9868340-9868360,9868639-9868986
Length = 122
Score = 27.1 bits (57), Expect = 2.9
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = -3
Query: 189 RANNQIFKNVAQQRNMSVICTPPRNK 112
+A Q+ + A RNM VICT P K
Sbjct: 84 QAGRQVGRRPASIRNMRVICTTPNYK 109
>03_06_0084 +
31536286-31536718,31536907-31536983,31537380-31537428,
31537778-31538048,31540876-31541104,31541511-31541750
Length = 432
Score = 27.1 bits (57), Expect = 2.9
Identities = 10/14 (71%), Positives = 11/14 (78%)
Frame = +1
Query: 73 HQAGEEDHLTSGNL 114
HQ EEDHL +GNL
Sbjct: 352 HQGAEEDHLITGNL 365
>03_05_0733 - 27241021-27241767
Length = 248
Score = 26.6 bits (56), Expect = 3.8
Identities = 14/36 (38%), Positives = 18/36 (50%)
Frame = +1
Query: 13 VAVMLDVDQHPGWDGRPAHHHQAGEEDHLTSGNLVS 120
+AV DV G+ R H H DHL G+LV+
Sbjct: 56 LAVRPDVFSVAGFANRTGHWHALRGNDHLFRGDLVA 91
>08_01_0034 - 253972-254916
Length = 314
Score = 26.2 bits (55), Expect = 5.1
Identities = 14/43 (32%), Positives = 17/43 (39%)
Frame = +1
Query: 64 AHHHQAGEEDHLTSGNLVSWRSADNAHVPLLGDILKDLVVSAK 192
AH E HL G L S A + L D+ D+V K
Sbjct: 263 AHREDMAERAHLVKGCLAMLSSGAEAVIAELDDLFDDIVEGRK 305
>01_05_0318 -
20826377-20826571,20826663-20826764,20826839-20826973,
20827924-20828016,20828072-20828230,20828325-20828929,
20829098-20829119,20829339-20829393,20829426-20829466,
20830250-20830363
Length = 506
Score = 26.2 bits (55), Expect = 5.1
Identities = 11/24 (45%), Positives = 13/24 (54%)
Frame = -2
Query: 97 DDLPRQPDGGGLVCHPSLGVGQHQ 26
DD QPD G +C P+ G G Q
Sbjct: 60 DDEQHQPDIGTHLCSPAAGFGDQQ 83
>09_02_0607 -
11183382-11183387,11183481-11183637,11184220-11184284,
11184397-11184469,11184759-11184905,11185515-11185562,
11185637-11185716,11186112-11186439,11186525-11186576,
11187397-11187523,11187613-11187990
Length = 486
Score = 25.8 bits (54), Expect = 6.7
Identities = 14/51 (27%), Positives = 24/51 (47%)
Frame = +1
Query: 28 DVDQHPGWDGRPAHHHQAGEEDHLTSGNLVSWRSADNAHVPLLGDILKDLV 180
DVD+ G+D + + E D L ++ S D + LGDI+ + +
Sbjct: 109 DVDEFDGFDAQSEYDGGVPEIDEEDEKALAAFMSKDTSSKRSLGDIILEKI 159
>12_01_0258 - 1900564-1901101,1901838-1902004
Length = 234
Score = 25.4 bits (53), Expect = 8.9
Identities = 11/34 (32%), Positives = 14/34 (41%)
Frame = +1
Query: 49 WDGRPAHHHQAGEEDHLTSGNLVSWRSADNAHVP 150
W AH +A E D + + R A HVP
Sbjct: 28 WKAEAAHERRAAERDAMDGMGMGGTREAGADHVP 61
>04_04_1492 -
33974804-33975040,33975121-33975214,33975351-33975754,
33975855-33976747,33977014-33977167
Length = 593
Score = 25.4 bits (53), Expect = 8.9
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = +1
Query: 94 HLTSGNLVSWRSADNAHVP 150
H SG+LV+W + DNA P
Sbjct: 82 HSVSGDLVNWAALDNALDP 100
>04_04_0007 + 22119477-22120004
Length = 175
Score = 25.4 bits (53), Expect = 8.9
Identities = 9/22 (40%), Positives = 14/22 (63%)
Frame = +1
Query: 46 GWDGRPAHHHQAGEEDHLTSGN 111
G GRPAHHH+ + + + G+
Sbjct: 132 GMRGRPAHHHRLMQGGYSSGGS 153
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,988,528
Number of Sequences: 37544
Number of extensions: 146541
Number of successful extensions: 344
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 343
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 344
length of database: 14,793,348
effective HSP length: 71
effective length of database: 12,127,724
effective search space used: 363831720
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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