Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_pT_D15
         (305 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006662-3|AAF39895.1|  368|Caenorhabditis elegans Hypothetical ...    32   0.091
Z99282-1|CAB16532.1| 1037|Caenorhabditis elegans Hypothetical pr...    28   1.1  
U41538-5|AAG00012.2|  762|Caenorhabditis elegans Hypothetical pr...    28   1.5  
AF098997-10|AAC68712.2|  325|Caenorhabditis elegans Serpentine r...    27   2.0  
AF067211-8|ABB51202.1|   99|Caenorhabditis elegans Hypothetical ...    27   3.4  
Z83731-6|CAN86605.2|  208|Caenorhabditis elegans Hypothetical pr...    26   4.5  
Z83731-5|CAN86604.2|  223|Caenorhabditis elegans Hypothetical pr...    26   4.5  
AL031633-19|CAA21031.1|  710|Caenorhabditis elegans Hypothetical...    26   6.0  
AF098997-9|AAC68720.1|  325|Caenorhabditis elegans Serpentine re...    26   6.0  
Z81512-1|CAB04173.1|  601|Caenorhabditis elegans Hypothetical pr...    25   7.9  
Z29443-11|CAK55173.1|  367|Caenorhabditis elegans Hypothetical p...    25   7.9  
U53139-5|AAK18933.2|  322|Caenorhabditis elegans Serpentine rece...    25   7.9  
U12964-4|AAA91219.3|  447|Caenorhabditis elegans Temporarily ass...    25   7.9  

>AC006662-3|AAF39895.1|  368|Caenorhabditis elegans Hypothetical
           protein H23L24.4 protein.
          Length = 368

 Score = 31.9 bits (69), Expect = 0.091
 Identities = 13/35 (37%), Positives = 21/35 (60%)
 Frame = +2

Query: 173 IWLLARSKFLIPNILF*YNYSSKCSLKFFYVKLTM 277
           +W    SK+L+PN +F Y  SS C+  + +V L +
Sbjct: 35  LWDRTYSKYLLPNSIFLYKRSSTCTRTYIFVILRL 69


>Z99282-1|CAB16532.1| 1037|Caenorhabditis elegans Hypothetical
           protein Y70C5A.2 protein.
          Length = 1037

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 14/25 (56%), Positives = 18/25 (72%)
 Frame = +2

Query: 113 LFLGGVQITLMFLCWATFLKIWLLA 187
           LFL G+Q+TL+F C+  FL I  LA
Sbjct: 214 LFLLGIQVTLLF-CFLLFLPICFLA 237


>U41538-5|AAG00012.2|  762|Caenorhabditis elegans Hypothetical
           protein R04E5.2 protein.
          Length = 762

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 13/38 (34%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
 Frame = -3

Query: 183 NNQIFKNVAQQRNMSVICTPPRNKVSRGEM-IFLASLM 73
           N + F+N+ Q+    V+  PP+N  S G + +F A +M
Sbjct: 572 NPKAFENLIQRNIREVLIVPPKNSTSPGTLNLFEAGVM 609


>AF098997-10|AAC68712.2|  325|Caenorhabditis elegans Serpentine
           receptor, class i protein43 protein.
          Length = 325

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = +2

Query: 104 LETLFLGGVQITLMFLCWATFLKIWLLARSKFLIPNILF 220
           + T  L G+Q  L+FLC+A   +     +   +IP ILF
Sbjct: 91  ITTHLLLGIQYVLLFLCFARRHQAIAKIKQHHVIPEILF 129


>AF067211-8|ABB51202.1|   99|Caenorhabditis elegans Hypothetical
           protein B0205.13 protein.
          Length = 99

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = +1

Query: 40  HPGWDGRPAHHHQAGEEDHLTSGNLVSWRSADNAHVP 150
           HP W+    HHHQ   + H  + N V+ ++A +  +P
Sbjct: 54  HPWWN----HHHQCWHQYHHRTENTVNSQNAPSQVIP 86


>Z83731-6|CAN86605.2|  208|Caenorhabditis elegans Hypothetical
           protein M04C9.1b protein.
          Length = 208

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +1

Query: 70  HHQAGEEDHLTSGNLVSWRSADN 138
           +HQ  E+ +L  GN VS  S DN
Sbjct: 100 YHQKDEKGYLPEGNKVSCESVDN 122


>Z83731-5|CAN86604.2|  223|Caenorhabditis elegans Hypothetical
           protein M04C9.1a protein.
          Length = 223

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +1

Query: 70  HHQAGEEDHLTSGNLVSWRSADN 138
           +HQ  E+ +L  GN VS  S DN
Sbjct: 115 YHQKDEKGYLPEGNKVSCESVDN 137


>AL031633-19|CAA21031.1|  710|Caenorhabditis elegans Hypothetical
           protein Y39A1A.22 protein.
          Length = 710

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 12/35 (34%), Positives = 23/35 (65%), Gaps = 1/35 (2%)
 Frame = -3

Query: 123 PRNKVSRGEMIFLASLMVVGWS-AIPAWVLVNIKH 22
           PRN +S   ++ +AS M++ WS A+ A++  ++ H
Sbjct: 299 PRNHLSYQTLMQIASFMIMLWSFAVLAYLYAHMLH 333


>AF098997-9|AAC68720.1|  325|Caenorhabditis elegans Serpentine
           receptor, class i protein42 protein.
          Length = 325

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +2

Query: 125 GVQITLMFLCWATFLKIWLLARSKFLIPNIL 217
           GVQ  L+FLC+A   +     + + +IPN L
Sbjct: 98  GVQYVLLFLCFARRHQAIAKIKQQHVIPNFL 128


>Z81512-1|CAB04173.1|  601|Caenorhabditis elegans Hypothetical
           protein F25C8.1 protein.
          Length = 601

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 9/19 (47%), Positives = 15/19 (78%)
 Frame = -3

Query: 126 PPRNKVSRGEMIFLASLMV 70
           PP +K++ G M+F+ S+MV
Sbjct: 277 PPHSKLAYGGMVFVRSMMV 295


>Z29443-11|CAK55173.1|  367|Caenorhabditis elegans Hypothetical
           protein T07C4.11 protein.
          Length = 367

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 10/35 (28%), Positives = 18/35 (51%)
 Frame = -3

Query: 105 RGEMIFLASLMVVGWSAIPAWVLVNIKHDRDXQRK 1
           + E   L      GW+A+  WVL N + +++  +K
Sbjct: 25  KNEPFILGEWSTSGWTAVKDWVLPNGQPNKEYLKK 59


>U53139-5|AAK18933.2|  322|Caenorhabditis elegans Serpentine
           receptor, class xa protein4 protein.
          Length = 322

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = +2

Query: 155 WATFLKIWLLARSKFLIPNILF*YNYSSKCSLKF 256
           W T +K+ L + S  LI  ++    Y S+CSL F
Sbjct: 127 WFTDIKLALYSMSIMLILFVVLLIPYYSECSLNF 160


>U12964-4|AAA91219.3|  447|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 340 protein.
          Length = 447

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 15/49 (30%), Positives = 26/49 (53%)
 Frame = +2

Query: 92  IISPLETLFLGGVQITLMFLCWATFLKIWLLARSKFLIPNILF*YNYSS 238
           +++ L  L LG V    +   W T +    LA S +++  +LF +N+SS
Sbjct: 75  LLAVLRMLILGVVYGICLVKQWYT-VAFTTLASSAYILMKVLFYFNHSS 122


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,860,458
Number of Sequences: 27780
Number of extensions: 130125
Number of successful extensions: 342
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 332
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 342
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 323034540
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)