Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_pT_D13
         (757 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3H1.02c |||metallopeptidase|Schizosaccharomyces pombe|chr 1|...    29   0.95 
SPCC1672.09 |||triglyceride lipase-cholesterol esterase |Schizos...    27   2.9  
SPCC1450.09c |||phospholipase |Schizosaccharomyces pombe|chr 3||...    26   5.0  
SPAC2F3.05c |||xylose and arabinose reductase |Schizosaccharomyc...    26   6.7  
SPAC1006.02 |||WD repeat protein, human GNB1L family|Schizosacch...    25   8.8  
SPCC548.06c |ght8||hexose transporter Ght8 |Schizosaccharomyces ...    25   8.8  
SPBC18H10.16 |||amino acid permease, unknown 9|Schizosaccharomyc...    25   8.8  
SPBC16E9.11c |pub3||ubiquitin-protein ligase E3|Schizosaccharomy...    25   8.8  
SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2 |Schiz...    25   8.8  

>SPAC3H1.02c |||metallopeptidase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1036

 Score = 28.7 bits (61), Expect = 0.95
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -3

Query: 176 ISAERAHSHVECPKLLKXLCFLG 108
           + A  AH ++ CP  L+ LCF+G
Sbjct: 48  VVATEAHDNLGCPHTLEHLCFMG 70


>SPCC1672.09 |||triglyceride lipase-cholesterol esterase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 467

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 17/59 (28%), Positives = 28/59 (47%), Gaps = 4/59 (6%)
 Frame = -2

Query: 687 WKIEDGAEFDTPDRLEYKFGPVASGSLEFDY----RGPHNCHVSLTTHPAEVDPMYEII 523
           + I+D A++D PD ++Y      SG  +  Y    +G      SL+ HP   D +  +I
Sbjct: 190 FSIDDFAQYDIPDTIDYIL--KTSGQTKLTYIGFSQGTAQAFASLSIHPLLNDKINSLI 246


>SPCC1450.09c |||phospholipase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 633

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = -2

Query: 597 YRGPHNCHVSLTTHPAEVDPMYEIIIGG 514
           Y+G  N   + TT+P E  P+ E+I GG
Sbjct: 395 YQGYGNASNTTTTNPLEPYPIIELIDGG 422


>SPAC2F3.05c |||xylose and arabinose reductase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 275

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 11/37 (29%), Positives = 20/37 (54%)
 Frame = -2

Query: 591 GPHNCHVSLTTHPAEVDPMYEIIIGGWENTQSVIRYC 481
           GPH+    L +HP  +  + +I +  + + Q V+ YC
Sbjct: 142 GPHHIQELLDSHPKIIPCVNQIELHPFCSQQKVVDYC 178


>SPAC1006.02 |||WD repeat protein, human GNB1L
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 368

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 7/17 (41%), Positives = 10/17 (58%)
 Frame = -3

Query: 299 CWCVTGCRGRSSWSGST 249
           CWC+T  R + +W   T
Sbjct: 39  CWCLTSMRPKCAWRAHT 55


>SPCC548.06c |ght8||hexose transporter Ght8 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 547

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 13/42 (30%), Positives = 19/42 (45%), Gaps = 3/42 (7%)
 Frame = -2

Query: 744 EPFPVXYVGVCTGWGATGSWKIEDGAEFDTP---DRLEYKFG 628
           E +P+ Y   C     TG+W       F TP   D + +K+G
Sbjct: 393 ESYPIRYRSKCAAVATTGNWLWGFLITFFTPFISDSIGFKYG 434


>SPBC18H10.16 |||amino acid permease, unknown 9|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1050

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 14/49 (28%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
 Frame = +2

Query: 209  PVRTPKCVTGKGAGSTHSMRTVPDI-LSRTNNL-PHLHSIKNFLNSLGF 349
            P+R P+ ++G    S    ++ P + +  +  L PH+HS+K+F     F
Sbjct: 872  PIRFPRRMSGYNFRSASFDKSAPPLSVPLSFRLGPHMHSVKSFETESSF 920


>SPBC16E9.11c |pub3||ubiquitin-protein ligase E3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 786

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 5/48 (10%)
 Frame = +2

Query: 233 TGKGAGSTHSMRTVPDILSRTNNLPHL-----HSIKNFLNSLGFMIPG 361
           TG GAG+  S R+ P    +TNN   L     H + +F +  G + PG
Sbjct: 194 TGTGAGTGASHRSSPVTNRQTNNTSALSNSNAHIMSSFEDQYGRLPPG 241


>SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1273

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 18/58 (31%), Positives = 26/58 (44%)
 Frame = +1

Query: 160 ARSAEMRNAPLTAGPISSAHAEVRYGKGCRVDPLHEDRPRHPVTHQQSAASPFNQELL 333
           +RS    +  L + P+SS + +        + P   D   HP T  Q+A  PF Q LL
Sbjct: 108 SRSTYRTDGGLNSQPVSSLNNQWGNYNPAFL-PSRYDSSFHPYTISQAANQPFPQHLL 164


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,243,400
Number of Sequences: 5004
Number of extensions: 68642
Number of successful extensions: 163
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 163
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 361294920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)