Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_pT_D13
         (757 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_02_0313 - 8866182-8866381,8866470-8866638                           31   0.99 
10_08_0209 + 15869966-15870024,15870050-15870138,15870963-15872359     29   3.0  
08_02_0270 + 15108178-15108587,15108678-15108774,15109445-151094...    29   4.0  
04_03_0548 - 17035394-17035749,17035761-17036295,17036325-170364...    29   4.0  
08_02_1498 + 27553449-27553730,27553834-27553946,27554063-275541...    29   5.3  
10_02_0146 - 5837734-5837978,5838005-5838196,5838783-5838936           28   9.2  
08_02_0851 - 21866088-21866210,21866311-21866413,21866531-218667...    28   9.2  

>02_02_0313 - 8866182-8866381,8866470-8866638
          Length = 122

 Score = 31.1 bits (67), Expect = 0.99
 Identities = 19/54 (35%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
 Frame = -2

Query: 726 YVGVCTGW--GATGSWKIEDGAEFDTPDRLEYKFGPVASGSLEFDYRGPHNCHV 571
           +VG   GW  G  G W  E+G  F   D L +K+ P+    L+ D+ G   C V
Sbjct: 30  HVGDDKGWTFGVAG-W--ENGKAFKVGDVLVFKYSPMMHNVLQVDHAGYDGCKV 80


>10_08_0209 + 15869966-15870024,15870050-15870138,15870963-15872359
          Length = 514

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 14/41 (34%), Positives = 20/41 (48%)
 Frame = -3

Query: 269 SSWSGSTLHPFP*RTSACALDMGPAVNGALRISAERAHSHV 147
           SS  G    P   R   C L  GPA  G LR+++++   H+
Sbjct: 22  SSKLGRAFRPINFRRGPCTLPRGPANLGMLRMTSDQQRCHI 62


>08_02_0270 +
           15108178-15108587,15108678-15108774,15109445-15109492,
           15109583-15109806,15111367-15111463,15111556-15111651,
           15112297-15112544,15112632-15112715,15112787-15113236,
           15114880-15115024,15115116-15115217,15115677-15115769,
           15117308-15117349,15119085-15119113,15119210-15119251,
           15119922-15119997,15120764-15120835,15121208-15121326,
           15121428-15121491,15121576-15123009
          Length = 1323

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 13/41 (31%), Positives = 20/41 (48%)
 Frame = -3

Query: 497 LSFVIAGRNPTRYRNQSCPTSCSY*LIYTKHIVTKLWTLRR 375
           L F +  R P  Y  +  P   S+  I T+ I+T+ W L +
Sbjct: 388 LQFAVCRRCPRSYHRKCLPREISFEDINTQGIITRAWELSK 428


>04_03_0548 -
           17035394-17035749,17035761-17036295,17036325-17036458,
           17037053-17037134
          Length = 368

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 22/77 (28%), Positives = 33/77 (42%)
 Frame = -3

Query: 590 DRTTAMFPSQLIPQK*IQCMK*SSAVGRTHNLSFVIAGRNPTRYRNQSCPTSCSY*LIYT 411
           D+ TA+ PS+L P    +C     A        F +    PT  R Q   +S  Y     
Sbjct: 295 DQVTAIRPSRLRPWSKCKC----HAQRHLQQAHFTVLA--PTPMRLQLANSSVRYLAGIA 348

Query: 410 KHIVTKLWTLRR*RSRH 360
           + ++ K+WT  + R RH
Sbjct: 349 EDVLVKIWTWTQSRKRH 365


>08_02_1498 +
           27553449-27553730,27553834-27553946,27554063-27554129,
           27554310-27554402,27554516-27554659,27554860-27554954,
           27555120-27555412,27555514-27555632,27555742-27556094,
           27556177-27556286,27556403-27556512,27556802-27557671
          Length = 882

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +2

Query: 248 GSTHSMRTVPDILSRTNNLPHLHSIKNFL 334
           G  + +R +PDI+ RTNN P    +K F+
Sbjct: 133 GLPYWLREIPDIIFRTNNEPFKKYMKQFV 161


>10_02_0146 - 5837734-5837978,5838005-5838196,5838783-5838936
          Length = 196

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 20/46 (43%), Positives = 22/46 (47%), Gaps = 4/46 (8%)
 Frame = -1

Query: 283 DVGDGPHGVGRPCTLSR----NALRRAHWIWGPRSMAHYAFRQNGR 158
           DVG G   VGRPC  +R    N L  A  I GP  +  Y   Q GR
Sbjct: 42  DVGPGRFQVGRPCWYNRTAWDNRLSCALGITGPHGIMDYPM-QLGR 86


>08_02_0851 -
           21866088-21866210,21866311-21866413,21866531-21866744,
           21866877-21867075,21867171-21868151
          Length = 539

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = +1

Query: 499 LCVLPTADDYFIHWIYFCGMSCEGNMAVVR 588
           LCVLP    Y +H I  CGM     + V++
Sbjct: 226 LCVLPMFHVYSLHSILLCGMRAGAAIVVMK 255


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,053,850
Number of Sequences: 37544
Number of extensions: 499771
Number of successful extensions: 1440
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1394
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1440
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2016060588
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)