Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_pT_D13
         (757 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z78060-5|CAB01492.1|  216|Caenorhabditis elegans Hypothetical pr...    29   2.7  
AL022271-2|CAA18350.1|  216|Caenorhabditis elegans Hypothetical ...    29   2.7  
U41034-2|AAA82379.1|  915|Caenorhabditis elegans Hypothetical pr...    28   8.2  
U23139-4|AAN65329.1|   82|Caenorhabditis elegans Hypothetical pr...    28   8.2  
U14635-13|AAC46654.2|  322|Caenorhabditis elegans Hypothetical p...    28   8.2  

>Z78060-5|CAB01492.1|  216|Caenorhabditis elegans Hypothetical
           protein C34D1.5 protein.
          Length = 216

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
 Frame = +2

Query: 230 VTGKGAGSTHSMRTVPDILSRTNNLPHLHSI-KNFLNSLGFMIPGVGIVTYEESITL 397
           V+G    ST S  +  + L R+N L HL ++ K  +    F  PGV   + +E + L
Sbjct: 51  VSGNSTSSTTSDDSDDESLHRSNQLKHLETLFKESILRTSFSRPGVSNTSCDEKLDL 107


>AL022271-2|CAA18350.1|  216|Caenorhabditis elegans Hypothetical
           protein C34D1.5 protein.
          Length = 216

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
 Frame = +2

Query: 230 VTGKGAGSTHSMRTVPDILSRTNNLPHLHSI-KNFLNSLGFMIPGVGIVTYEESITL 397
           V+G    ST S  +  + L R+N L HL ++ K  +    F  PGV   + +E + L
Sbjct: 51  VSGNSTSSTTSDDSDDESLHRSNQLKHLETLFKESILRTSFSRPGVSNTSCDEKLDL 107


>U41034-2|AAA82379.1|  915|Caenorhabditis elegans Hypothetical
           protein M02D8.3 protein.
          Length = 915

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 15/46 (32%), Positives = 23/46 (50%)
 Frame = +1

Query: 175 MRNAPLTAGPISSAHAEVRYGKGCRVDPLHEDRPRHPVTHQQSAAS 312
           +RN P+     S A+A  RY K     PL+  +P  PV   + A++
Sbjct: 242 LRNHPVLNNQRSCANAAARYNKNVPSLPLNTPKPITPVVITECASN 287


>U23139-4|AAN65329.1|   82|Caenorhabditis elegans Hypothetical
           protein F13H8.12 protein.
          Length = 82

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
 Frame = -2

Query: 366 PTPGIMNPNEFKKFLIEWRCGRLLVRDRMSGTVLME-WVDPA 244
           P  GIM P E K F I++  G L   D M     ++ W+ PA
Sbjct: 29  PPVGIMEPGETKSFEIQFNGGHLPNTDVMDADHSVKMWLTPA 70


>U14635-13|AAC46654.2|  322|Caenorhabditis elegans Hypothetical
           protein C27H5.6 protein.
          Length = 322

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 14/60 (23%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
 Frame = +1

Query: 451 WLRYLVGFL-PAITNDRLCVLPTADDYFIHWIYFCGMSCEGNMAVVRSAVIEFQRTRGDR 627
           ++ ++V F  P+I +DR+C +  +       I++C ++C   +A   +  + F R+ G +
Sbjct: 153 FIAFVVSFASPSINDDRMCAVMNSTGIVYGTIHYCWIACSYMIAFAVTLNL-FLRSHGSK 211


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,328,002
Number of Sequences: 27780
Number of extensions: 411594
Number of successful extensions: 953
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 914
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 953
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1798543458
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)