Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_pT_D09
         (686 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1672.03c |||guanine deaminase |Schizosaccharomyces pombe|chr...   174   9e-45
SPAC1F8.04c |||hydrolase |Schizosaccharomyces pombe|chr 1|||Manual     70   4e-13
SPBC16H5.12c |||conserved fungal protein|Schizosaccharomyces pom...    34   0.022
SPBC1604.09c |||exoribonuclease Rex4 |Schizosaccharomyces pombe|...    29   0.83 
SPCC16A11.05c |dim1||U4/U6 x U5 tri-snRNP complex subunit Dim1|S...    28   1.1  
SPAC4G9.02 |||ribonuclease H2 complex subunit|Schizosaccharomyce...    27   1.9  
SPBP4H10.16c |||phosphatase activator |Schizosaccharomyces pombe...    27   3.4  
SPBC27B12.12c |||CorA family magnesium ion transporter |Schizosa...    26   5.9  
SPAC186.07c |||hydroxyacid dehydrogenase |Schizosaccharomyces po...    25   7.8  
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    25   7.8  

>SPCC1672.03c |||guanine deaminase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 527

 Score =  174 bits (424), Expect = 9e-45
 Identities = 91/197 (46%), Positives = 121/197 (61%), Gaps = 3/197 (1%)
 Frame = -3

Query: 684 STXKELQDTEEFVQ--KVLDYXNELIQPVVTPRFAVSCDHQLLSGLAMIANKYGCSMQSH 511
           S    L+ T + +    +LD   E++ P++TPRFA SC   LLSG   +A K+   +Q+H
Sbjct: 180 SAESSLEATRQLISYMSILDPKREMVTPIITPRFAPSCTEDLLSGCGELAEKHNLPIQTH 239

Query: 510 VCENLKEINYVLEINPRCKSYCEVYDKSKILHEKCIMAHAVHLTDEEIDLLSKKGVSVAH 331
           + EN  EI  V E+ P  KSY +VYD  K+L  + I+AHA+HL DEEI+LL+K+   ++H
Sbjct: 240 ISENTSEIELVKELFPERKSYADVYDYYKLLTPQTILAHAIHLEDEEIELLTKRSSGISH 299

Query: 330 CPASNTRLKSGLCPVRKLLDNNIVVGLGTDVSGGDSATILDAVRRTMDVSTCLE-LQGAD 154
           CP SN+ L SGL  VRKLLD+ I VGLGTDVSGG + +IL A+R     S  L  + G  
Sbjct: 300 CPTSNSILASGLANVRKLLDSGINVGLGTDVSGGYAPSILIALRHAAMTSRSLSYVLGDP 359

Query: 153 NYSLDWKEAFXLATLGG 103
              LD  E   LAT GG
Sbjct: 360 KVMLDLSELLYLATQGG 376


>SPAC1F8.04c |||hydrolase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 463

 Score = 69.7 bits (163), Expect = 4e-13
 Identities = 36/103 (34%), Positives = 60/103 (58%), Gaps = 2/103 (1%)
 Frame = -3

Query: 543 ANKYGCSMQSHVCENLKEINYVLEINPRCKSYCEVYDKSKILHEKCIMAHAVHLTDEEID 364
           AN  G +M  H  E   +  +         +YC+      +L  K ++AH VHL  ++++
Sbjct: 222 ANNIGITM--HCAEVKADREFFASKEHTPMTYCKDLG---LLGPKTVLAHMVHLDTQDLE 276

Query: 363 LLSK--KGVSVAHCPASNTRLKSGLCPVRKLLDNNIVVGLGTD 241
           +L K   G SVAHCP SN++L SG+ P++++L+ +I+VG+G D
Sbjct: 277 ILEKHGNGTSVAHCPVSNSKLGSGIAPLKEMLEKSIIVGIGCD 319


>SPBC16H5.12c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 682

 Score = 33.9 bits (74), Expect = 0.022
 Identities = 28/110 (25%), Positives = 49/110 (44%)
 Frame = -3

Query: 681 TXKELQDTEEFVQKVLDYXNELIQPVVTPRFAVSCDHQLLSGLAMIANKYGCSMQSHVCE 502
           T K L D EE   ++    + + +  V  + A +C   L    A +  +YG S  +  C 
Sbjct: 190 TAKSLLDREE--ARIFITHHPIGREGVLSQLATACQADLTLS-AGLHFRYGASY-NEFCV 245

Query: 501 NLKEINYVLEINPRCKSYCEVYDKSKILHEKCIMAHAVHLTDEEIDLLSK 352
           N    +Y+ +++     + EVYD  K   EK +     HL +  + L+S+
Sbjct: 246 NHSPEHYLQKLSAARAQFMEVYDTVKAEVEKMVTPEQHHLINNVVRLVSR 295


>SPBC1604.09c |||exoribonuclease Rex4 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 260

 Score = 28.7 bits (61), Expect = 0.83
 Identities = 25/84 (29%), Positives = 43/84 (51%), Gaps = 2/84 (2%)
 Frame = -3

Query: 429 SKILHEKCIMAHAVHLTDEEIDLLS--KKGVSVAHCPASNTRLKSGLCPVRKLLDNNIVV 256
           +KIL  + ++ HAVH  D ++ LLS  ++ +      +   +L  G  P  K L   I  
Sbjct: 163 AKILDNRVLVGHAVH-NDLKVLLLSHPRRMIRDTSRFSGYRKLAKGRTPGLKKLAEVI-- 219

Query: 255 GLGTDVSGGDSATILDAVRRTMDV 184
            LG D+  G  +++ DA + TM++
Sbjct: 220 -LGRDIQSGQHSSVQDA-QATMEL 241


>SPCC16A11.05c |dim1||U4/U6 x U5 tri-snRNP complex subunit
           Dim1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 142

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
 Frame = +3

Query: 312 ECSKQDSGLRRLLSLTVNQS-LHLLDVQHVP 401
           EC KQD  L R+    VN + ++L+D+  VP
Sbjct: 37  ECIKQDEVLYRIAEKVVNMAVIYLVDIDEVP 67


>SPAC4G9.02 |||ribonuclease H2 complex subunit|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 326

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 14/49 (28%), Positives = 27/49 (55%)
 Frame = -3

Query: 657 EEFVQKVLDYXNELIQPVVTPRFAVSCDHQLLSGLAMIANKYGCSMQSH 511
           EE ++ + +  NEL + V     ++S   +L +G+    NKY  ++Q+H
Sbjct: 110 EELLKLICNKSNELGKNVGWSTMSISA-RELAAGMLRYRNKYNLNLQAH 157


>SPBP4H10.16c |||phosphatase activator |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 295

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = +2

Query: 200 RTASSIVALSPPDTSVPRPTTILLSK 277
           RTA+  +ALSPP  S P    I+L K
Sbjct: 101 RTANDEIALSPPPPSFPGKCGIILLK 126


>SPBC27B12.12c |||CorA family magnesium ion transporter
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 803

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 12/45 (26%), Positives = 25/45 (55%)
 Frame = +2

Query: 167 SSKHVDTSIVLRTASSIVALSPPDTSVPRPTTILLSKSFLTGQRP 301
           SS+H++ ++    +S     +P   +VP+ + I L +S +  Q+P
Sbjct: 62  SSQHLEANVQSPVSSQTTYATPSAYAVPQESEIELHESEMVPQKP 106


>SPAC186.07c |||hydroxyacid dehydrogenase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 332

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 32/142 (22%), Positives = 54/142 (38%), Gaps = 2/142 (1%)
 Frame = -3

Query: 534 YGCSMQSHVCENLKEINYVLEINPRCKSYCEVYDKSKILHEKC-IMAHAVHLTDEEIDLL 358
           +GC + +H  +  KE+    +   +     EV  K+  L   C +     HL DE++   
Sbjct: 167 FGCEVLAHDIKPNKELE---KFGIQFVEQQEVLAKADFLCLHCPLTPDTEHLVDEKLLAS 223

Query: 357 SKKGVSVAHCPASNTRLKSGLCPVRKLLDNNIVVGLGTDVSGGDSATIL-DAVRRTMDVS 181
            KKGV + +           L    K +++  V G   DV  G+      D     +  +
Sbjct: 224 MKKGVKIINTSRGGLVDTKALV---KAIESGQVGGCAMDVYEGERRLFYRDLSNEVIKDT 280

Query: 180 TCLELQGADNYSLDWKEAFXLA 115
           T  +L    N  +   +AF  A
Sbjct: 281 TFQQLANFPNVLVTSHQAFFTA 302


>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 4924

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -2

Query: 352  ERSLRSPLSCFEHSPKVRPL 293
            E+SL SP+  F H P VR +
Sbjct: 2432 EKSLNSPIGKFNHEPIVRQI 2451


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,591,212
Number of Sequences: 5004
Number of extensions: 53344
Number of successful extensions: 177
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 168
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 176
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 317927284
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)