Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P04_pT_D09
(686 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_0282 - 16749358-16749445,16749640-16749695,16749965-167501... 58 9e-09
06_03_0849 - 25344261-25344416,25344652-25344808,25344917-253450... 30 2.0
01_06_0073 + 26191822-26192116,26192227-26192445,26193655-261938... 29 4.6
11_06_0697 + 26371193-26371397,26371562-26374254 28 6.0
09_06_0110 + 20923523-20924065 28 8.0
05_07_0041 + 27261968-27262145,27262160-27262717,27262814-27263589 28 8.0
02_02_0284 - 8547126-8547187,8547306-8547395,8547810-8547861,854... 28 8.0
07_01_1036 + 9021395-9021658,9024214-9024690 25 9.6
>12_02_0282 -
16749358-16749445,16749640-16749695,16749965-16750137,
16750768-16750924,16751279-16751422,16751959-16752134,
16753024-16753045,16753845-16753937,16754259-16754431,
16754550-16754760
Length = 430
Score = 57.6 bits (133), Expect = 9e-09
Identities = 33/101 (32%), Positives = 47/101 (46%)
Frame = -3
Query: 543 ANKYGCSMQSHVCENLKEINYVLEINPRCKSYCEVYDKSKILHEKCIMAHAVHLTDEEID 364
A K + H+ E E V++ +K L + AH+V L EI
Sbjct: 216 AQKLNTGIHMHIAEIPYENELVMQTKGIDHGTVTYLEKIDFLRSNLLAAHSVWLNKPEIG 275
Query: 363 LLSKKGVSVAHCPASNTRLKSGLCPVRKLLDNNIVVGLGTD 241
K V V+HCPAS R+ G P+R++LD+ + V LGTD
Sbjct: 276 HFLKADVKVSHCPASAMRM-LGFAPIREMLDSGVCVSLGTD 315
>06_03_0849 -
25344261-25344416,25344652-25344808,25344917-25345056,
25345160-25345295,25345392-25345663,25345809-25346068,
25346716-25347035,25347287-25347352,25347439-25347510,
25347609-25347680,25347776-25347858,25348068-25348139,
25348389-25348485,25348918-25349050,25349158-25349236
Length = 704
Score = 29.9 bits (64), Expect = 2.0
Identities = 24/87 (27%), Positives = 38/87 (43%), Gaps = 2/87 (2%)
Frame = +2
Query: 161 PCSSKHVDTSIVLRTASSIVALSPPDTSVPRPTTILLSKS-FLTGQRPDFRRVFEAG-QW 334
PC + + S V +SI D ++ LL S F + ++ F + F G +W
Sbjct: 53 PCGAAWMGVSCVGSAVTSISEFGRLDPAIQANNGALLVFSVFFSCRKKGFFQAFWYGAEW 112
Query: 335 ATETPFFDSKSISSSVRCTACAIIHFS 415
+ P S SI ++RC A +FS
Sbjct: 113 HSWLPTIQSASIEDNLRCRNLAGNNFS 139
>01_06_0073 +
26191822-26192116,26192227-26192445,26193655-26193803,
26193910-26194186,26194683-26194963
Length = 406
Score = 28.7 bits (61), Expect = 4.6
Identities = 15/44 (34%), Positives = 22/44 (50%)
Frame = +2
Query: 224 LSPPDTSVPRPTTILLSKSFLTGQRPDFRRVFEAGQWATETPFF 355
LSPP +V +LLS + + P + R+F G T+T F
Sbjct: 16 LSPPPAAVVVAVAVLLSAAEAATEEPCYPRLFSFGDSLTDTGNF 59
>11_06_0697 + 26371193-26371397,26371562-26374254
Length = 965
Score = 28.3 bits (60), Expect = 6.0
Identities = 27/98 (27%), Positives = 45/98 (45%)
Frame = -3
Query: 570 QLLSGLAMIANKYGCSMQSHVCENLKEINYVLEINPRCKSYCEVYDKSKILHEKCIMAHA 391
Q+LS L + GC + + L +IN + EI R S +V + +L E ++A
Sbjct: 837 QILSRLRRLELS-GCPKLKALPQQLAQINSLKEIELRWASSLKVVENFPLLSEMLLIATC 895
Query: 390 VHLTDEEIDLLSKKGVSVAHCPASNTRLKSGLCPVRKL 277
L ++ +L + + V CP N RL L + +L
Sbjct: 896 QAL-EKVSNLPQVRELRVQDCP--NLRLVEDLSTLEQL 930
>09_06_0110 + 20923523-20924065
Length = 180
Score = 27.9 bits (59), Expect = 8.0
Identities = 10/23 (43%), Positives = 17/23 (73%)
Frame = +2
Query: 203 TASSIVALSPPDTSVPRPTTILL 271
T S+ ++SPP + VP PT++L+
Sbjct: 122 TTDSLYSVSPPPSCVPMPTSLLV 144
>05_07_0041 + 27261968-27262145,27262160-27262717,27262814-27263589
Length = 503
Score = 27.9 bits (59), Expect = 8.0
Identities = 23/84 (27%), Positives = 32/84 (38%)
Frame = +2
Query: 158 APCSSKHVDTSIVLRTASSIVALSPPDTSVPRPTTILLSKSFLTGQRPDFRRVFEAGQWA 337
A + HV +I ASS AL TSV TT L + +G A +
Sbjct: 131 AAATGSHVAAAITAAIASSTCALVTATTSVITSTTGALFATAASGAIASSTGALLAATTS 190
Query: 338 TETPFFDSKSISSSVRCTACAIIH 409
P +I+SS R ++H
Sbjct: 191 GGIPSTTGSTITSSTRSQRRGLLH 214
>02_02_0284 -
8547126-8547187,8547306-8547395,8547810-8547861,
8548209-8548284,8550513-8550632,8553334-8553423,
8553842-8554024,8554125-8554185,8554437-8554477,
8554563-8554727,8555699-8555776,8556137-8556282
Length = 387
Score = 27.9 bits (59), Expect = 8.0
Identities = 22/68 (32%), Positives = 28/68 (41%), Gaps = 3/68 (4%)
Frame = +2
Query: 227 SPP---DTSVPRPTTILLSKSFLTGQRPDFRRVFEAGQWATETPFFDSKSISSSVRCTAC 397
SPP D S P + S G R + V+ G +A P S +SSV T C
Sbjct: 227 SPPADSDGSPPHRRSPRQSSGSPPGSRSRCKFVWRTGHYALPPPSMLCCSTASSVTATVC 286
Query: 398 AIIHFSCK 421
I+ S K
Sbjct: 287 PILVCSAK 294
>07_01_1036 + 9021395-9021658,9024214-9024690
Length = 246
Score = 24.6 bits (51), Expect(2) = 9.6
Identities = 13/59 (22%), Positives = 27/59 (45%), Gaps = 2/59 (3%)
Frame = -3
Query: 672 ELQDTEEFVQKVLDYXNELIQPVVTPRFAVSC--DHQLLSGLAMIANKYGCSMQSHVCE 502
E++++ + K+ D ++++ V + D Q+ S L ++A KY CE
Sbjct: 102 EMEESRSGIIKIYDVSYDVLRAFVHYMYTAEALLDEQMASDLLVLAEKYEVKNLKAYCE 160
Score = 21.4 bits (43), Expect(2) = 9.6
Identities = 8/22 (36%), Positives = 14/22 (63%)
Frame = -3
Query: 456 KSYCEVYDKSKILHEKCIMAHA 391
K+YCE + SK+ ++ I +A
Sbjct: 156 KAYCEKFLTSKVSNDNAITHYA 177
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,446,690
Number of Sequences: 37544
Number of extensions: 334606
Number of successful extensions: 904
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 875
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 903
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1744894544
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -