Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_pT_D09
         (686 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U13019-11|AAC24449.1|  445|Caenorhabditis elegans Hypothetical p...    36   0.021
Z66560-1|CAA91449.1|  214|Caenorhabditis elegans Hypothetical pr...    33   0.19 
U23169-5|AAC46698.2|  316|Caenorhabditis elegans Hypothetical pr...    31   1.0  
Z68301-6|CAA92621.1|  170|Caenorhabditis elegans Hypothetical pr...    29   4.1  
AF067617-5|AAC17559.1| 2957|Caenorhabditis elegans Temporarily a...    28   7.2  
AL110500-5|CAB60428.1| 1050|Caenorhabditis elegans Hypothetical ...    27   9.5  

>U13019-11|AAC24449.1|  445|Caenorhabditis elegans Hypothetical
           protein T12A2.1 protein.
          Length = 445

 Score = 36.3 bits (80), Expect = 0.021
 Identities = 17/54 (31%), Positives = 32/54 (59%)
 Frame = -3

Query: 402 MAHAVHLTDEEIDLLSKKGVSVAHCPASNTRLKSGLCPVRKLLDNNIVVGLGTD 241
           M+H   ++D+ I  +++ G      P++   L+    P RKL++NN++V LG+D
Sbjct: 301 MSHLEEISDKGIRGMAQAGSVAVLLPSTAFILRLTPPPARKLIENNVIVALGSD 354


>Z66560-1|CAA91449.1|  214|Caenorhabditis elegans Hypothetical
           protein D1053.1 protein.
          Length = 214

 Score = 33.1 bits (72), Expect = 0.19
 Identities = 28/112 (25%), Positives = 49/112 (43%)
 Frame = -3

Query: 612 QPVVTPRFAVSCDHQLLSGLAMIANKYGCSMQSHVCENLKEINYVLEINPRCKSYCEVYD 433
           +PV+   +  SC  ++   LA+    Y       + E  K  + + EINP  K    V D
Sbjct: 5   KPVLYSYWRSSCSWRVRIALALKNVDYEYKTVDLLSEEAK--SKLKEINPAAKVPTFVVD 62

Query: 432 KSKILHEKCIMAHAVHLTDEEIDLLSKKGVSVAHCPASNTRLKSGLCPVRKL 277
             +++ E   +   +  T  ++ LL K  +  AH  A +  + SG+ P+  L
Sbjct: 63  -GQVITESLAIIEYLEETHPDVPLLPKDPIKRAHARAISLLVASGIQPLHNL 113


>U23169-5|AAC46698.2|  316|Caenorhabditis elegans Hypothetical
           protein C29H12.6 protein.
          Length = 316

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 20/59 (33%), Positives = 26/59 (44%)
 Frame = +2

Query: 218 VALSPPDTSVPRPTTILLSKSFLTGQRPDFRRVFEAGQWATETPFFDSKSISSSVRCTA 394
           +A  PP TS+P P     S S   G  P   R+     W  E   ++S + SS  R TA
Sbjct: 76  IAFPPPPTSMPPPMITSTSSSTCNGSFPRRNRI-RTNPWIGENKMWESMT-SSMGRTTA 132


>Z68301-6|CAA92621.1|  170|Caenorhabditis elegans Hypothetical
           protein W01B6.8 protein.
          Length = 170

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 10/23 (43%), Positives = 17/23 (73%)
 Frame = -1

Query: 305 SQASVLLGSFWTIILSLVLEQTC 237
           SQ S++L  FW+++L L++  TC
Sbjct: 33  SQISIILFLFWSLMLQLIIGTTC 55


>AF067617-5|AAC17559.1| 2957|Caenorhabditis elegans Temporarily
            assigned gene nameprotein 192 protein.
          Length = 2957

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 15/47 (31%), Positives = 23/47 (48%)
 Frame = +2

Query: 110  NVAX*NASFQSSE*LSAPCSSKHVDTSIVLRTASSIVALSPPDTSVP 250
            NVA   A   +++  S P +SK    S    + S++ +   P TSVP
Sbjct: 2842 NVASMAAMAAAAQAASTPTTSKQASASTSTPSTSAVASAQTPSTSVP 2888


>AL110500-5|CAB60428.1| 1050|Caenorhabditis elegans Hypothetical
           protein Y87G2A.5 protein.
          Length = 1050

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 9/28 (32%), Positives = 18/28 (64%)
 Frame = -3

Query: 621 ELIQPVVTPRFAVSCDHQLLSGLAMIAN 538
           ++I+P++ P++ V C H     +A +AN
Sbjct: 450 DVIEPILKPQWYVKCAHMAEKAVAAVAN 477


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,552,449
Number of Sequences: 27780
Number of extensions: 309665
Number of successful extensions: 936
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 902
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 936
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1571291122
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)