Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_pT_D09
         (686 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.    22   4.8  
M12598-1|AAA27733.1|   77|Apis mellifera protein ( Bee preprosec...    22   6.3  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    22   6.3  
AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    22   6.3  
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    21   8.3  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    21   8.3  

>AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.
          Length = 615

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -3

Query: 672 ELQDTEEFVQKVLDYXNELIQ 610
           EL+  +EFV+   DY N +IQ
Sbjct: 516 ELKQCDEFVEDSDDYWNCVIQ 536


>M12598-1|AAA27733.1|   77|Apis mellifera protein ( Bee
           preprosecapin mRNA, complete cds. ).
          Length = 77

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 6/23 (26%), Positives = 15/23 (65%)
 Frame = -3

Query: 525 SMQSHVCENLKEINYVLEINPRC 457
           S+++   + + E  Y++++ PRC
Sbjct: 39  SLEARSADLVPEPRYIIDVPPRC 61


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 9/40 (22%), Positives = 19/40 (47%)
 Frame = +1

Query: 178 RRHIHRSAYGVKYCRTVASGHVCSKTNDNIIVQKLPNRTE 297
           R ++H  A+G    R +    +C K  +  I+ +  +R +
Sbjct: 59  RHNVHSLAFGAIQLRQLLKRQLCEKRKEVSIITEDSSRKQ 98


>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 9/29 (31%), Positives = 14/29 (48%)
 Frame = -3

Query: 411 KCIMAHAVHLTDEEIDLLSKKGVSVAHCP 325
           KCI+     ++DE+I  L   G  +   P
Sbjct: 123 KCIIVMPEKMSDEKISTLYALGAKIIRTP 151


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = +3

Query: 219 SHCRLRTRLFQDQRQYYCPK 278
           S C L  R F++Q  Y C K
Sbjct: 272 SKCSLCQRRFEEQGNYSCLK 291


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 9/29 (31%), Positives = 12/29 (41%)
 Frame = -1

Query: 248  EQTCPEATVRQYLTPYAERWMCLRAWNYK 162
            E   PE  + + L PY      +  WN K
Sbjct: 1166 ENAYPEVELDRELRPYLRTAAAILTWNEK 1194


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 177,959
Number of Sequences: 438
Number of extensions: 3689
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20952180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)