Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_pT_D08
         (536 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly pro...    22   3.5  
AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    22   3.5  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    21   6.0  

>AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly
           protein 8 protein.
          Length = 416

 Score = 22.2 bits (45), Expect = 3.5
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +1

Query: 100 NTYIIIKDRYQKNSVH 147
           NT   +K +YQ N+VH
Sbjct: 277 NTEQFVKSQYQANNVH 292


>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 22.2 bits (45), Expect = 3.5
 Identities = 9/42 (21%), Positives = 18/42 (42%)
 Frame = +3

Query: 177 ILIRVTQEIQMFVLYFFVN*QLPLHFLFLHGFKKEKKTLDFR 302
           IL     E  + + Y+     +P +F+F+     +    DF+
Sbjct: 289 ILTEAYTEFNLTIKYYKSGSTVPFNFMFIADLNNQSTASDFK 330


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 21.4 bits (43), Expect = 6.0
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = -2

Query: 187 RIKMSQRAVMCS*YAHCFFD 128
           RI + +R       AHC+FD
Sbjct: 231 RIVLEERRAQSHLEAHCYFD 250


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 140,892
Number of Sequences: 438
Number of extensions: 2889
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15213684
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)