Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P04_pT_D07
(302 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z50006-6|CAA90298.1| 334|Caenorhabditis elegans Hypothetical pr... 29 0.64
AC199172-10|ABO33271.1| 302|Caenorhabditis elegans F-box a prot... 28 1.1
AY204179-1|AAO39183.1| 486|Caenorhabditis elegans nuclear recep... 27 2.0
AF078783-3|AAN63404.1| 504|Caenorhabditis elegans Nuclear hormo... 27 2.0
AF078783-2|AAK82901.1| 486|Caenorhabditis elegans Nuclear hormo... 27 2.0
Z92822-4|CAD18893.2| 791|Caenorhabditis elegans Hypothetical pr... 25 7.9
Z92822-3|CAB07302.3| 774|Caenorhabditis elegans Hypothetical pr... 25 7.9
Z92822-2|CAB70188.2| 850|Caenorhabditis elegans Hypothetical pr... 25 7.9
AF025472-2|AAB71074.2| 625|Caenorhabditis elegans Hypothetical ... 25 7.9
AF025472-1|AAY43980.1| 832|Caenorhabditis elegans Hypothetical ... 25 7.9
>Z50006-6|CAA90298.1| 334|Caenorhabditis elegans Hypothetical
protein T07C5.5 protein.
Length = 334
Score = 29.1 bits (62), Expect = 0.64
Identities = 14/44 (31%), Positives = 19/44 (43%)
Frame = +1
Query: 40 IDHVTAHCTICLLKTTMFQYQGSDSYNCTHYSKRYYAIDSVLAC 171
+D +T C +C KTT F Y C + +R VL C
Sbjct: 1 MDCITRSCKVCNEKTTGFNYGVQSCNACKMFFRRALDTPKVLKC 44
>AC199172-10|ABO33271.1| 302|Caenorhabditis elegans F-box a protein
protein 37 protein.
Length = 302
Score = 28.3 bits (60), Expect = 1.1
Identities = 15/51 (29%), Positives = 27/51 (52%)
Frame = +1
Query: 58 HCTICLLKTTMFQYQGSDSYNCTHYSKRYYAIDSVLACLTFFFHRIYSFSK 210
H +IC+ + Y DS NC ++++ A++ V C+ FF+ + F K
Sbjct: 60 HVSICVDRIETNYYYDDDSSNC--FNRKQKAVEGV-DCMNAFFNDLKLFLK 107
>AY204179-1|AAO39183.1| 486|Caenorhabditis elegans nuclear receptor
NHR-80 protein.
Length = 486
Score = 27.5 bits (58), Expect = 2.0
Identities = 10/42 (23%), Positives = 18/42 (42%)
Frame = +1
Query: 52 TAHCTICLLKTTMFQYQGSDSYNCTHYSKRYYAIDSVLACLT 177
+ C IC + T F ++ C + +R A+ C+T
Sbjct: 9 STRCLICSAQATGFHFEAQSCSACAAFFRRTVALTKSFKCIT 50
>AF078783-3|AAN63404.1| 504|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 80, isoform b protein.
Length = 504
Score = 27.5 bits (58), Expect = 2.0
Identities = 10/42 (23%), Positives = 18/42 (42%)
Frame = +1
Query: 52 TAHCTICLLKTTMFQYQGSDSYNCTHYSKRYYAIDSVLACLT 177
+ C IC + T F ++ C + +R A+ C+T
Sbjct: 27 STRCLICSAQATGFHFEAQSCSACAAFFRRTVALTKSFKCIT 68
>AF078783-2|AAK82901.1| 486|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 80, isoform a protein.
Length = 486
Score = 27.5 bits (58), Expect = 2.0
Identities = 10/42 (23%), Positives = 18/42 (42%)
Frame = +1
Query: 52 TAHCTICLLKTTMFQYQGSDSYNCTHYSKRYYAIDSVLACLT 177
+ C IC + T F ++ C + +R A+ C+T
Sbjct: 9 STRCLICSAQATGFHFEAQSCSACAAFFRRTVALTKSFKCIT 50
>Z92822-4|CAD18893.2| 791|Caenorhabditis elegans Hypothetical
protein ZK520.4c protein.
Length = 791
Score = 25.4 bits (53), Expect = 7.9
Identities = 15/49 (30%), Positives = 28/49 (57%), Gaps = 2/49 (4%)
Frame = -3
Query: 222 FRLPFGERVDPMEEKRQARENTINSVITFGIMCAIIRIAPL--VLEHGS 82
FRL + +E++++A NT++ + + CAI+RI VL+H +
Sbjct: 697 FRLQAPQVNKAVEKEQEAVANTVSQDRKYYMECAIVRIMKTRKVLKHNA 745
>Z92822-3|CAB07302.3| 774|Caenorhabditis elegans Hypothetical
protein ZK520.4b protein.
Length = 774
Score = 25.4 bits (53), Expect = 7.9
Identities = 15/49 (30%), Positives = 28/49 (57%), Gaps = 2/49 (4%)
Frame = -3
Query: 222 FRLPFGERVDPMEEKRQARENTINSVITFGIMCAIIRIAPL--VLEHGS 82
FRL + +E++++A NT++ + + CAI+RI VL+H +
Sbjct: 680 FRLQAPQVNKAVEKEQEAVANTVSQDRKYYMECAIVRIMKTRKVLKHNA 728
>Z92822-2|CAB70188.2| 850|Caenorhabditis elegans Hypothetical
protein ZK520.4a protein.
Length = 850
Score = 25.4 bits (53), Expect = 7.9
Identities = 15/49 (30%), Positives = 28/49 (57%), Gaps = 2/49 (4%)
Frame = -3
Query: 222 FRLPFGERVDPMEEKRQARENTINSVITFGIMCAIIRIAPL--VLEHGS 82
FRL + +E++++A NT++ + + CAI+RI VL+H +
Sbjct: 756 FRLQAPQVNKAVEKEQEAVANTVSQDRKYYMECAIVRIMKTRKVLKHNA 804
>AF025472-2|AAB71074.2| 625|Caenorhabditis elegans Hypothetical
protein ZK250.5a protein.
Length = 625
Score = 25.4 bits (53), Expect = 7.9
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = +1
Query: 148 AIDSVLACLTFFFHRIYSFSKGQSEHFCD*LIC*KQL 258
AI S +CL F + + +E F D LIC KQ+
Sbjct: 221 AIVSNSSCLKHFCFTYHCLHENITEQFLDNLICEKQI 257
>AF025472-1|AAY43980.1| 832|Caenorhabditis elegans Hypothetical
protein ZK250.5b protein.
Length = 832
Score = 25.4 bits (53), Expect = 7.9
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = +1
Query: 148 AIDSVLACLTFFFHRIYSFSKGQSEHFCD*LIC*KQL 258
AI S +CL F + + +E F D LIC KQ+
Sbjct: 428 AIVSNSSCLKHFCFTYHCLHENITEQFLDNLICEKQI 464
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,065,032
Number of Sequences: 27780
Number of extensions: 105134
Number of successful extensions: 256
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 252
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 256
length of database: 12,740,198
effective HSP length: 70
effective length of database: 10,795,598
effective search space used: 323867940
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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