Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_pT_D06
         (565 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC926.04c |hsp90|swo1|heat shock protein Hsp90|Schizosaccharom...    29   0.47 
SPAC22F8.11 |plc1||phosphoinositide phospholipase C Plc1|Schizos...    28   1.1  
SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces po...    26   3.3  
SPAC27F1.09c |prp10|sap155|U2 snRNP-associated protein Sap155|Sc...    26   4.4  
SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch...    26   4.4  
SPCC320.10 |srp72||signal recognition particle subunit Srp72|Sch...    25   5.8  
SPCC1450.14c |ero12||ER oxidoreductin Ero1b|Schizosaccharomyces ...    25   7.7  

>SPAC926.04c |hsp90|swo1|heat shock protein
           Hsp90|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 704

 Score = 29.1 bits (62), Expect = 0.47
 Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
 Frame = +2

Query: 293 VVAVTRVDLLRSC-QSYNEDGEQNEQFREHFEQFSK 397
           ++ V R +L+R C   +NE  E  E F+  ++ FSK
Sbjct: 383 IMKVIRKNLVRRCLDMFNEIAEDKENFKTFYDAFSK 418


>SPAC22F8.11 |plc1||phosphoinositide phospholipase C
           Plc1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 899

 Score = 27.9 bits (59), Expect = 1.1
 Identities = 18/56 (32%), Positives = 23/56 (41%)
 Frame = -3

Query: 461 RPADEQIFFKSSRAGVLDHQSTLKTAQNVRETVHSVRRPRCSSGKTSTDLLWLRLQ 294
           R   EQ FFK   +   D  STL+   N   +  S +    S  K    L WL L+
Sbjct: 55  RKKSEQDFFKMLSSRDRDAHSTLRKRSNSLSSFLSTKSTSASENKFHGGLNWLSLK 110


>SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 658

 Score = 26.2 bits (55), Expect = 3.3
 Identities = 11/35 (31%), Positives = 21/35 (60%)
 Frame = -2

Query: 309 LVTATTITDIRIQATSVIPDTVPWPMDRTVAMLPL 205
           +V  TTIT +     +++ +T+  PM+ T  +LP+
Sbjct: 120 MVETTTITPMVEAMITLMEETMTTPMEETTTILPM 154


>SPAC27F1.09c |prp10|sap155|U2 snRNP-associated protein
            Sap155|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1188

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +1

Query: 490  VLNTYWPSFYTRAAFXAEVTLPYRP 564
            V NTYW S+ +     A+  +PY P
Sbjct: 1145 VRNTYWTSYNSAYVQSADAMVPYYP 1169


>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
            homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2609

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = -1

Query: 46   NAFVFECFFCXWQ 8
            N F+  CFFC W+
Sbjct: 1516 NQFMLSCFFCRWE 1528



 Score = 25.0 bits (52), Expect = 7.7
 Identities = 11/27 (40%), Positives = 18/27 (66%), Gaps = 2/27 (7%)
 Frame = -3

Query: 398  TLKTAQNVRETVHSVRR--PRCSSGKT 324
            T+   Q +R+ +H++R+  PR SS KT
Sbjct: 1161 TITAEQEMRDLLHNIRQPLPRSSSSKT 1187


>SPCC320.10 |srp72||signal recognition particle subunit
           Srp72|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 561

 Score = 25.4 bits (53), Expect = 5.8
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = -2

Query: 117 IMILLFISFEILINNFRGLLSIYK 46
           ++ LL +  +I   NFRG LSIY+
Sbjct: 328 VVALLLMQHKISNGNFRGALSIYQ 351


>SPCC1450.14c |ero12||ER oxidoreductin Ero1b|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 571

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = +2

Query: 362 EQFREHFEQFSKLTDDLGHRR 424
           E FREHF+  S L D +G  R
Sbjct: 375 EDFREHFKTVSALMDCVGCER 395


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,935,386
Number of Sequences: 5004
Number of extensions: 34037
Number of successful extensions: 119
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 119
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 238029836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)