Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_pT_D06
         (565 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41996-1|AAA83471.2|  306|Caenorhabditis elegans Serpentine rece...    28   4.0  
Z54270-3|CAA91027.2|  560|Caenorhabditis elegans Hypothetical pr...    28   5.3  
Z69361-2|CAA93288.1| 2165|Caenorhabditis elegans Hypothetical pr...    27   9.3  
Z69360-10|CAA93287.1| 2165|Caenorhabditis elegans Hypothetical p...    27   9.3  
AC006619-3|AAK68253.1|  943|Caenorhabditis elegans Hypothetical ...    27   9.3  

>U41996-1|AAA83471.2|  306|Caenorhabditis elegans Serpentine
           receptor, class sx protein22 protein.
          Length = 306

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 8/26 (30%), Positives = 17/26 (65%)
 Frame = -3

Query: 110 FYCLYHLKY*LIIFVDYFRFTKRLCF 33
           FYC+Y ++  +++ ++ +  T  LCF
Sbjct: 55  FYCIYFIQLRVMMIMEIYNITNNLCF 80


>Z54270-3|CAA91027.2|  560|Caenorhabditis elegans Hypothetical
           protein F11C1.3 protein.
          Length = 560

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 10/34 (29%), Positives = 19/34 (55%)
 Frame = -3

Query: 509 GQYVFNTTHYREFK*IRPADEQIFFKSSRAGVLD 408
           G Y +  T +++F   R  D +IF+ +++  V D
Sbjct: 92  GPYTYTETEFKDFTQFRDNDNEIFYVNNKTWVYD 125


>Z69361-2|CAA93288.1| 2165|Caenorhabditis elegans Hypothetical protein
            F25H8.3 protein.
          Length = 2165

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 13/42 (30%), Positives = 20/42 (47%)
 Frame = +1

Query: 199  CMERQHSHRTIHRPGDCIRDNRRSLDTYIRNCCSRNQSRSVE 324
            C E   S+  +HR   C+ D+ R +D    + C R Q  + E
Sbjct: 1030 CSETCGSNGKMHRKSYCVDDSNRRVD---ESLCGREQKEATE 1068


>Z69360-10|CAA93287.1| 2165|Caenorhabditis elegans Hypothetical
            protein F25H8.3 protein.
          Length = 2165

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 13/42 (30%), Positives = 20/42 (47%)
 Frame = +1

Query: 199  CMERQHSHRTIHRPGDCIRDNRRSLDTYIRNCCSRNQSRSVE 324
            C E   S+  +HR   C+ D+ R +D    + C R Q  + E
Sbjct: 1030 CSETCGSNGKMHRKSYCVDDSNRRVD---ESLCGREQKEATE 1068


>AC006619-3|AAK68253.1|  943|Caenorhabditis elegans Hypothetical
           protein C46C11.1 protein.
          Length = 943

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 12/31 (38%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
 Frame = +3

Query: 429 RLKKNLFIGRPNSFKF-PIVSRIKYVLAVVL 518
           +L  ++F GRP  F+F P +++I  ++ VVL
Sbjct: 216 KLDSSVFFGRPIGFQFSPSINKIFRIIGVVL 246


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,705,012
Number of Sequences: 27780
Number of extensions: 191850
Number of successful extensions: 514
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 509
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 514
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1166125180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)