Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_pT_D04
         (592 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0279 - 15249361-15249612,15251270-15251506,15252704-152527...    35   0.056
03_01_0423 + 3240224-3240394,3241464-3241628,3242322-3242339,324...    32   0.39 
08_01_0081 - 574119-575204,575794-576191,576321-576382,576581-57...    29   2.1  
12_01_0428 + 3374519-3375423,3376663-3376742,3377206-3377217,337...    28   4.8  
02_05_0258 + 27222058-27223198,27223297-27223460,27224399-272245...    28   6.4  
01_05_0777 + 25110356-25110662,25112569-25112789,25112880-251131...    27   8.5  

>08_02_0279 -
           15249361-15249612,15251270-15251506,15252704-15252772,
           15252845-15252895,15254009-15254056,15254187-15254267,
           15256219-15256257,15256486-15256551,15258113-15258236,
           15258576-15258696,15258771-15258900,15259692-15259853
          Length = 459

 Score = 34.7 bits (76), Expect = 0.056
 Identities = 19/72 (26%), Positives = 33/72 (45%)
 Frame = -2

Query: 489 YPGGITYYPRFPDYKDPEITPSKLFRVERIKSSKHFPYWQKRILDELKIHEETRVTVVKN 310
           Y   + ++PRFPD K   + P +L R   +K   H   W  + + E++  EE  +   + 
Sbjct: 334 YVRSVAFHPRFPDNKLSAVPPLRLKRERELKRRPHQNGWLFKRVPEMRDPEEPVMLFTRP 393

Query: 309 IPEINAKLWKIK 274
           I     K+  I+
Sbjct: 394 IDPDKLKMAGIR 405


>03_01_0423 + 3240224-3240394,3241464-3241628,3242322-3242339,
            3242494-3242836,3244138-3248540,3248928-3249107,
            3249108-3250892,3251055-3252173
          Length = 2727

 Score = 31.9 bits (69), Expect = 0.39
 Identities = 26/92 (28%), Positives = 40/92 (43%), Gaps = 3/92 (3%)
 Frame = -2

Query: 375  WQKRILDELKIHEETRVTVVKNIPEINAKLWKIKHLIKITPIEFPYGEPTADDINYTILK 196
            W K +LD+L    +    V  +I EI  K+            E+        +I+ ++L+
Sbjct: 2551 WSKNVLDKLASDAQRLSIVQASIEEIKQKMVGASKGKSTVSSEYSSIRAQLQEIDGSVLE 2610

Query: 195  E-NGQCLVTKKLE--PEFGQIQALEEFDSDRK 109
            + +  C VTKK E  P F     LE + S RK
Sbjct: 2611 QIDFNCNVTKKAENYPAFEVSAELEGYSSRRK 2642


>08_01_0081 -
           574119-575204,575794-576191,576321-576382,576581-576653,
           576754-576824,576961-577148,577230-577377,577465-577503,
           577601-577656,577745-577798,577900-578003,578117-578217,
           578726-578796,578912-578968,579306-579422,579653-579682
          Length = 884

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 17/73 (23%), Positives = 34/73 (46%), Gaps = 5/73 (6%)
 Frame = -2

Query: 495 IRYPGGITYYPRFPDYK--DPEITPSKLFR---VERIKSSKHFPYWQKRILDELKIHEET 331
           +++P G TY+ R+  +   D +    +L     +E +K       WQ+ IL +  + E  
Sbjct: 312 VKFPAGRTYHRRYTKFHGTDRDAAAERLAHDALLEHMKWESQIEEWQRPILQDKSLPEWY 371

Query: 330 RVTVVKNIPEINA 292
            +T+   +  +NA
Sbjct: 372 PITLFNELYYLNA 384


>12_01_0428 +
           3374519-3375423,3376663-3376742,3377206-3377217,
           3377337-3377379,3378304-3380332
          Length = 1022

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 24/89 (26%), Positives = 41/89 (46%), Gaps = 4/89 (4%)
 Frame = -2

Query: 336 ETRVTVVKNIPEINAKLWKIKHLIKITPIEFPYGEPTADDINYTI--LKENGQCLVTKKL 163
           + R T +K++P+   KL K++HL+     +  +  P   +    +  LK+       K  
Sbjct: 730 DVRQTQLKDLPKSVTKLEKLEHLLFFDQGDSGWMLPQGINKMKALRQLKKAAVVFDAKVA 789

Query: 162 EP--EFGQIQALEEFDSDRKKMNSTTIKR 82
           E     GQ+Q L  F    KKMN+  +K+
Sbjct: 790 EEIGALGQLQELAIFVDTGKKMNNGVVKK 818


>02_05_0258 +
           27222058-27223198,27223297-27223460,27224399-27224575,
           27224713-27224761,27224991-27225793
          Length = 777

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 9/22 (40%), Positives = 16/22 (72%)
 Frame = -2

Query: 375 WQKRILDELKIHEETRVTVVKN 310
           W+K++ DE+K  E+ R+ + KN
Sbjct: 426 WEKKLYDEVKAEEKMRLLLAKN 447


>01_05_0777 +
           25110356-25110662,25112569-25112789,25112880-25113127,
           25113274-25113664,25113751-25114155,25115260-25115366,
           25115833-25116170,25116206-25116486,25116645-25116889,
           25116998-25117382,25117459-25117884
          Length = 1117

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 14/32 (43%), Positives = 21/32 (65%), Gaps = 2/32 (6%)
 Frame = -2

Query: 564 KLLRNFNPLVSIIRSKGYK--HPGGIRYPGGI 475
           ++LR + PL ++ R K YK    GG+RYP G+
Sbjct: 396 EVLRLYTPLTALQR-KTYKPMELGGVRYPAGV 426


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,712,823
Number of Sequences: 37544
Number of extensions: 326091
Number of successful extensions: 740
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 726
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 740
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1400060088
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)