Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_pT_D03
         (711 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3H1.05 |||CAAX prenyl protease |Schizosaccharomyces pombe|ch...    40   5e-04
SPAC10F6.09c |psm3|smc3|mitotic cohesin complex subunit Psm3|Sch...    29   0.50 
SPBC31F10.04c |srb4|med17|mediator complex subunit Srb4|Schizosa...    26   4.6  
SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux transpo...    25   8.1  

>SPAC3H1.05 |||CAAX prenyl protease |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 474

 Score = 39.5 bits (88), Expect = 5e-04
 Identities = 17/40 (42%), Positives = 25/40 (62%)
 Frame = -3

Query: 709 ELRSALIKLGKDNLDYPIYDKLYXAWYHSHPTLLHRIENI 590
           +L   LI++  DNL    +D LY ++YHSHP L+ R+  I
Sbjct: 426 DLGDGLIRIHDDNLSPLEFDSLYTSYYHSHPILVDRLNAI 465


>SPAC10F6.09c |psm3|smc3|mitotic cohesin complex subunit
           Psm3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1194

 Score = 29.5 bits (63), Expect = 0.50
 Identities = 17/54 (31%), Positives = 32/54 (59%)
 Frame = -3

Query: 604 RIENIKSQITAKRSE*FIIRL*KNVRSKMRTSILKSKIRAILVQVDIVTKSLHF 443
           RIE IK++IT       ++R+ K    +  T+I+KSK+ A+ +Q   +++ + F
Sbjct: 266 RIERIKAEITELNHSLELLRVEKQQNDEDYTNIMKSKV-ALELQSSQLSRQIEF 318


>SPBC31F10.04c |srb4|med17|mediator complex subunit
           Srb4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 545

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 16/50 (32%), Positives = 22/50 (44%)
 Frame = +3

Query: 438 LKKCRDLVTMSTCTRIALIFDFNMEVLILDLTFFYNLIMNHSDLFAVIWL 587
           LK CR     S    + +  D N  +++  L F+YNL  N   L    WL
Sbjct: 398 LKHCRKSDRRSQQPELYMAIDANAPLILRPLIFYYNL--NQESLEFQRWL 445


>SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux
           transporter Bfr1|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1530

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 14/40 (35%), Positives = 25/40 (62%)
 Frame = +3

Query: 486 ALIFDFNMEVLILDLTFFYNLIMNHSDLFAVIWLLIFSIL 605
           ++ F F  + LI+  + FY++ +N  D+F+   +L FSIL
Sbjct: 543 SMAFAFLFQSLIIG-SIFYDMKLNTVDVFSRGGVLFFSIL 581


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,645,611
Number of Sequences: 5004
Number of extensions: 49477
Number of successful extensions: 104
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 104
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 331187010
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)