Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_pT_D03
         (711 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81461-8|CAB03839.1|  442|Caenorhabditis elegans Hypothetical pr...    40   0.001
AF016443-3|AAC24281.1|  395|Caenorhabditis elegans Hypothetical ...    33   0.27 
U53149-4|AAA96120.1|  956|Caenorhabditis elegans Patched related...    31   0.81 
U29097-8|AAA68415.1|  341|Caenorhabditis elegans Serpentine rece...    30   1.9  
AC090999-13|AAP46264.2|  256|Caenorhabditis elegans Hypothetical...    29   4.3  

>Z81461-8|CAB03839.1|  442|Caenorhabditis elegans Hypothetical
           protein C04F12.10 protein.
          Length = 442

 Score = 40.3 bits (90), Expect = 0.001
 Identities = 18/41 (43%), Positives = 25/41 (60%)
 Frame = -3

Query: 706 LRSALIKLGKDNLDYPIYDKLYXAWYHSHPTLLHRIENIKS 584
           L  AL KLG DNL  PI D LY    H+HP ++ R+  +++
Sbjct: 396 LIGALTKLGVDNLSMPINDSLYSWCTHTHPPVVERVAAVRA 436


>AF016443-3|AAC24281.1|  395|Caenorhabditis elegans Hypothetical
           protein C17E7.7 protein.
          Length = 395

 Score = 32.7 bits (71), Expect = 0.27
 Identities = 34/107 (31%), Positives = 51/107 (47%), Gaps = 9/107 (8%)
 Frame = -1

Query: 360 VCSTMFINNHALKKRNYIISCSAQLSRLLSKVAICTFGQN-------FFIDMSIQIYLNI 202
           +C T   N   L   +Y+++  A+   LL K   C F  +       F+    +Q Y +I
Sbjct: 1   MCETGEFNLFYLYDYDYVLNNEAEKYDLLKK--FCKFVSSKKKWISQFYFKRIMQKYSDI 58

Query: 201 IVSFKEYGSKPALNKG**LTCYLSKMSFRRVL*LPMEY--KVNNSFF 67
           I   K++GS+P       LTC   KM FRRV+   +EY  K +N+ F
Sbjct: 59  I---KDFGSQPKQV----LTCDACKMFFRRVVTEKLEYTCKCSNNCF 98


>U53149-4|AAA96120.1|  956|Caenorhabditis elegans Patched related
           family protein 1 protein.
          Length = 956

 Score = 31.1 bits (67), Expect = 0.81
 Identities = 16/59 (27%), Positives = 29/59 (49%)
 Frame = +3

Query: 432 KELKKCRDLVTMSTCTRIALIFDFNMEVLILDLTFFYNLIMNHSDLFAVIWLLIFSILC 608
           K ++   D  +M   T     + F  + L L  + F N+I +   +FAV W++I  ++C
Sbjct: 741 KLMRSIADKYSMFNVTTFHEYYPFADQYLELTPSLFQNMISDLCTIFAVSWVMIPELIC 799


>U29097-8|AAA68415.1|  341|Caenorhabditis elegans Serpentine
           receptor, class a (alpha)protein 28 protein.
          Length = 341

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 15/51 (29%), Positives = 28/51 (54%)
 Frame = +2

Query: 287 NCALQLIM*FLFFNAWLFMNIVLHTDVYVIRVYRLNAMFKMHWNYLV*KRV 439
           N  + +++  LFF  +L+++  +     V  VY +N+ +K + NYL  K V
Sbjct: 190 NIRICVLIVLLFFAIFLYIHNKIREKRMVHNVYNINSRYKSYENYLATKSV 240


>AC090999-13|AAP46264.2|  256|Caenorhabditis elegans Hypothetical
           protein Y82E9BR.21 protein.
          Length = 256

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = -3

Query: 508 ILKSKIRAILVQVDIVTKSLHFFNSFLNQIIPMHFEHC 395
           +L S    I  ++D   +SL  FNSF++   P  +E C
Sbjct: 140 LLDSSFSCIRSEIDNFERSLDVFNSFVDYTSPTLYESC 177


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,307,967
Number of Sequences: 27780
Number of extensions: 269300
Number of successful extensions: 623
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 611
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 623
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1655655746
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)