Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P04_pT_D01
(741 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC16H5.09c |||alpha-1,2-mannosyltransferase |Schizosaccharomyc... 29 0.70
SPBC1718.06 |msp1|mgm1|mitochondrial GTPase Msp1|Schizosaccharom... 28 1.6
SPBC1709.09 |||mitochondrial translation termination factor|Schi... 27 2.1
SPAC23H4.13c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual 27 2.1
SPCC1450.12 |||conserved fungal protein|Schizosaccharomyces pomb... 27 2.8
SPBC3B9.04 |||mitochondrial methyltransferase |Schizosaccharomyc... 27 3.7
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 27 3.7
SPAC644.14c |rhp51|rad51|recombinase Rhp51|Schizosaccharomyces p... 27 3.7
SPBP35G2.03c |sgo1||shugoshin Sgo1|Schizosaccharomyces pombe|chr... 26 6.5
SPAC6G9.04 |mug79||meiotically upregulated gene Mug79|Schizosacc... 25 8.6
SPAC144.15c |cog1||Golgi transport complex subunit Cog1 |Schizos... 25 8.6
SPCC188.08c |ubp22|ubp5|ubiquitin C-terminal hydrolase Ubp22|Sch... 25 8.6
>SPBC16H5.09c |||alpha-1,2-mannosyltransferase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 372
Score = 29.1 bits (62), Expect = 0.70
Identities = 22/50 (44%), Positives = 27/50 (54%), Gaps = 4/50 (8%)
Frame = -2
Query: 470 KQLVKLVDV--TAEDLKYLIEYLYTGYLKN--LENADFVNLLMIADRYNL 333
K LV ++V E L Y + L G LK+ LENA FV L AD Y+L
Sbjct: 29 KALVNTLNVYKLEERLNYYNDRLLDGNLKSKELENATFVTLARNADLYDL 78
>SPBC1718.06 |msp1|mgm1|mitochondrial GTPase
Msp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 903
Score = 27.9 bits (59), Expect = 1.6
Identities = 14/56 (25%), Positives = 28/56 (50%)
Frame = -2
Query: 623 HTFEGLLKNLEDADFTLVSEDGEKFRVHKAILAAHSDVFKAMFREETIESQKQLVK 456
HT + + LE+ ++ + ++ + +A D+FKA F+E T + K V+
Sbjct: 532 HTADSIRTELEECNYQYKVQYNDRVLTADSYIAEGLDIFKAAFKEFTQKFGKSEVR 587
>SPBC1709.09 |||mitochondrial translation termination
factor|Schizosaccharomyces pombe|chr 2|||Manual
Length = 244
Score = 27.5 bits (58), Expect = 2.1
Identities = 26/118 (22%), Positives = 53/118 (44%)
Frame = -2
Query: 737 NFXNLDVGFMKNKSLYIAIAFPSPKILNLNVFDKLLTVHTFEGLLKNLEDADFTLVSEDG 558
NF L+ F+ +KS I P+P L L + + + +++ ED D + +
Sbjct: 88 NFTQLEALFIPSKS----IKAPTPSRL-LREIAAVSQKGSQQIIIRPFEDVDIKNILKAI 142
Query: 557 EKFRVHKAILAAHSDVFKAMFREETIESQKQLVKLVDVTAEDLKYLIEYLYTGYLKNL 384
E R ++ + + T+ES++QL K+++ A+D + + + T K +
Sbjct: 143 EDSRYPFVANKLNASTIEVKPQRTTLESRQQLAKVLEGYAKDSREQLSAMRTELKKEI 200
>SPAC23H4.13c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
Length = 184
Score = 27.5 bits (58), Expect = 2.1
Identities = 17/46 (36%), Positives = 26/46 (56%)
Frame = +2
Query: 410 DILSSISNLLQSRLQVLPTASDSQLSLP*T*L*IHHYVQPEWLYAL 547
D + S+LL + +L T S S LS T + +Y++P+WLY L
Sbjct: 26 DNIQVSSSLLSFLIYILYTFSISGLS---TFVITKYYIRPQWLYTL 68
>SPCC1450.12 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 821
Score = 27.1 bits (57), Expect = 2.8
Identities = 15/59 (25%), Positives = 34/59 (57%), Gaps = 2/59 (3%)
Frame = -2
Query: 617 FEGLLKNLEDADFTLVSEDGEKFRVHKAILAAHSDVFKAMFRE-ETIESQKQL-VKLVD 447
F LLK+L ++ +++ +D + +HK +L + + M R +I+ +K + ++L+D
Sbjct: 91 FRNLLKSLSKSNVSVLPDDSDATHLHKWLLKFQNMLTLLMSRAFHSIQDEKNINIELLD 149
>SPBC3B9.04 |||mitochondrial methyltransferase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 248
Score = 26.6 bits (56), Expect = 3.7
Identities = 10/30 (33%), Positives = 19/30 (63%)
Frame = +3
Query: 117 NKVSEKFSY*FCISDVFEGVYF*SVFVLFN 206
N++++K+S ++F G+YF F+L N
Sbjct: 54 NQIADKYSRKITREEIFSGIYFLRYFLLRN 83
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 26.6 bits (56), Expect = 3.7
Identities = 19/63 (30%), Positives = 31/63 (49%)
Frame = +1
Query: 427 FKSSAVTSTSFTNCF*LSIVSSLNIALNTSLCAARMALCTLNFSPSSDTKVKSASSKFLS 606
F S+A TSTS + S+VSS + ++S + + + PS+ + S SS S
Sbjct: 197 FSSAAPTSTSSSYLSSSSVVSSSSSPSSSSSSTLTSSSLSTSSIPSTSSSSSSTSSSLSS 256
Query: 607 NPS 615
+ S
Sbjct: 257 SSS 259
>SPAC644.14c |rhp51|rad51|recombinase Rhp51|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 365
Score = 26.6 bits (56), Expect = 3.7
Identities = 14/39 (35%), Positives = 18/39 (46%)
Frame = -2
Query: 368 VNLLMIADRYNLKGLRHLSQCALAEQLTIENAFYILAMA 252
V LL +ADRY L G L A A ++ +L A
Sbjct: 191 VRLLAVADRYGLNGEEVLDNVAYARAYNADHQLELLQQA 229
>SPBP35G2.03c |sgo1||shugoshin Sgo1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 319
Score = 25.8 bits (54), Expect = 6.5
Identities = 14/43 (32%), Positives = 26/43 (60%), Gaps = 2/43 (4%)
Frame = -2
Query: 254 ADMYDSNYLKAESLK--FIKKNKDTLKVNTFKDITNAELVREL 132
+++ + + L ESLK F+K+N++ +K+NT I E E+
Sbjct: 8 SNINNEDKLPMESLKKKFLKQNREIIKINTQLSIKIRESENEI 50
>SPAC6G9.04 |mug79||meiotically upregulated gene
Mug79|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1318
Score = 25.4 bits (53), Expect = 8.6
Identities = 11/33 (33%), Positives = 17/33 (51%)
Frame = -1
Query: 111 RLSLNFYPILLESVHFLFIYWSXNKINLKYVSC 13
+L L YP+ + F +Y +I LK +SC
Sbjct: 506 KLLLRKYPLDIAEHQFALVYSRFQRIPLKQISC 538
>SPAC144.15c |cog1||Golgi transport complex subunit Cog1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 701
Score = 25.4 bits (53), Expect = 8.6
Identities = 16/60 (26%), Positives = 30/60 (50%), Gaps = 4/60 (6%)
Frame = -2
Query: 545 VHKAILAAHSDVFKAMFREETIESQKQLVKLVDVTAE----DLKYLIEYLYTGYLKNLEN 378
V ++++HS +K +FR +I QL K V E +L+ + + Y +++ EN
Sbjct: 2 VETDLMSSHSSNWKEIFRTHSIAQTIQLEKFVSQQIEEKGRELQQNVCFNYQSFIEASEN 61
>SPCC188.08c |ubp22|ubp5|ubiquitin C-terminal hydrolase
Ubp22|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1108
Score = 25.4 bits (53), Expect = 8.6
Identities = 16/55 (29%), Positives = 27/55 (49%)
Frame = -2
Query: 659 LNLNVFDKLLTVHTFEGLLKNLEDADFTLVSEDGEKFRVHKAILAAHSDVFKAMF 495
L L +K++ VH F + + F+ V + EKF K LAA + +++F
Sbjct: 996 LQLYPEEKIVQVHHFHKDIARIHGIPFSFVIKPQEKFIDTKLRLAARTQYPESIF 1050
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,876,237
Number of Sequences: 5004
Number of extensions: 58340
Number of successful extensions: 200
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 192
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 200
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 351258950
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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