Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P04_pT_C23
(416 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
CU457741-15|CAM36357.1| 110|Caenorhabditis elegans Hypothetical... 122 1e-28
U97016-4|AAN84886.1| 2692|Caenorhabditis elegans Lethal protein ... 29 1.8
U97016-3|AAN84885.1| 2695|Caenorhabditis elegans Lethal protein ... 29 1.8
Z70718-5|CAA94670.1| 197|Caenorhabditis elegans Hypothetical pr... 28 3.1
U14635-13|AAC46654.2| 322|Caenorhabditis elegans Hypothetical p... 27 7.2
AL132948-25|CAC51048.1| 438|Caenorhabditis elegans Hypothetical... 27 7.2
Z81479-8|CAB03946.1| 1181|Caenorhabditis elegans Hypothetical pr... 26 9.5
Z81015-2|CAB02660.1| 411|Caenorhabditis elegans Hypothetical pr... 26 9.5
Z78018-7|CAB01449.2| 2577|Caenorhabditis elegans Hypothetical pr... 26 9.5
Z78013-10|CAB01427.2| 2577|Caenorhabditis elegans Hypothetical p... 26 9.5
U97016-5|AAB52352.1| 196|Caenorhabditis elegans Hypothetical pr... 26 9.5
AY314773-1|AAQ84880.1| 2596|Caenorhabditis elegans flamingo-like... 26 9.5
AC025727-10|AAK66029.1| 707|Caenorhabditis elegans Hypothetical... 26 9.5
>CU457741-15|CAM36357.1| 110|Caenorhabditis elegans Hypothetical
protein C42C1.14 protein.
Length = 110
Score = 122 bits (293), Expect = 1e-28
Identities = 61/106 (57%), Positives = 76/106 (71%), Gaps = 1/106 (0%)
Frame = -2
Query: 367 MVQRLTFRRRLSYNTKSNQRRIVRTPGGRLVYQYVKKPKKIPRCGQCKSKLRGIQPARPA 188
M R+T+RRRLSYNT SN++R+V+TPGGRLV QY+KK +IP+C KL GI PARP
Sbjct: 1 MSLRVTYRRRLSYNTTSNKKRLVKTPGGRLVVQYIKKRGQIPKCRDTGVKLHGITPARPI 60
Query: 187 ERSRLCYRKKTVKRVYGGVLCHKCVKQRIVRAFLIEEQKIV-KVLQ 53
L ++TV R YGG L VK+RI RAFL+EEQKIV KV++
Sbjct: 61 ALRLLKRNERTVTRAYGGCLSPNAVKERITRAFLVEEQKIVNKVIK 106
>U97016-4|AAN84886.1| 2692|Caenorhabditis elegans Lethal protein 363,
isoform b protein.
Length = 2692
Score = 28.7 bits (61), Expect = 1.8
Identities = 21/78 (26%), Positives = 36/78 (46%), Gaps = 1/78 (1%)
Frame = -2
Query: 376 SLKMVQRLTFRRRLSYNT-KSNQRRIVRTPGGRLVYQYVKKPKKIPRCGQCKSKLRGIQP 200
S +V +F +++ T K R++V L YQ++ K + PR + +L G+
Sbjct: 2318 SAPIVSIQSFSSKMNVITSKQRPRKMVIRGSNGLDYQFLLKGHEDPRQDERVMQLFGLVN 2377
Query: 199 ARPAERSRLCYRKKTVKR 146
A S C R T++R
Sbjct: 2378 TLLANNSETCRRNLTIQR 2395
>U97016-3|AAN84885.1| 2695|Caenorhabditis elegans Lethal protein 363,
isoform a protein.
Length = 2695
Score = 28.7 bits (61), Expect = 1.8
Identities = 21/78 (26%), Positives = 36/78 (46%), Gaps = 1/78 (1%)
Frame = -2
Query: 376 SLKMVQRLTFRRRLSYNT-KSNQRRIVRTPGGRLVYQYVKKPKKIPRCGQCKSKLRGIQP 200
S +V +F +++ T K R++V L YQ++ K + PR + +L G+
Sbjct: 2321 SAPIVSIQSFSSKMNVITSKQRPRKMVIRGSNGLDYQFLLKGHEDPRQDERVMQLFGLVN 2380
Query: 199 ARPAERSRLCYRKKTVKR 146
A S C R T++R
Sbjct: 2381 TLLANNSETCRRNLTIQR 2398
>Z70718-5|CAA94670.1| 197|Caenorhabditis elegans Hypothetical
protein C04G2.8 protein.
Length = 197
Score = 27.9 bits (59), Expect = 3.1
Identities = 21/70 (30%), Positives = 35/70 (50%), Gaps = 1/70 (1%)
Frame = -2
Query: 382 SKSLKMVQRLTFRRRLSYNTKSNQRRIVRTPG-GRLVYQYVKKPKKIPRCGQCKSKLRGI 206
S SL +V + RRR S ++S++R +VR+ G + + + R G+ +S R
Sbjct: 68 SPSLVVVISPSPRRRRSSTSRSSRRSVVRSASRGSVSRRSSSRGSVYGRTGRSRSSKRSR 127
Query: 205 QPARPAERSR 176
+R RSR
Sbjct: 128 SRSRSRSRSR 137
>U14635-13|AAC46654.2| 322|Caenorhabditis elegans Hypothetical
protein C27H5.6 protein.
Length = 322
Score = 26.6 bits (56), Expect = 7.2
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = +2
Query: 146 TFHCFLTVAKTGTFSRSSW 202
TFHC LTV + +R SW
Sbjct: 109 TFHCLLTVERVLAVNRVSW 127
>AL132948-25|CAC51048.1| 438|Caenorhabditis elegans Hypothetical
protein Y39B6A.33 protein.
Length = 438
Score = 26.6 bits (56), Expect = 7.2
Identities = 17/66 (25%), Positives = 33/66 (50%), Gaps = 2/66 (3%)
Frame = -2
Query: 367 MVQRLTFRRRLSYN--TKSNQRRIVRTPGGRLVYQYVKKPKKIPRCGQCKSKLRGIQPAR 194
+V +LT +++ + TK+ + V P + +KKP K+PR + +G + A
Sbjct: 67 VVPKLTKKQQAALEKITKNITQEHVTLPKPSTTSKILKKPAKLPRGNAILALKKGPKAAA 126
Query: 193 PAERSR 176
PA + +
Sbjct: 127 PAAKKK 132
>Z81479-8|CAB03946.1| 1181|Caenorhabditis elegans Hypothetical
protein C34F6.9 protein.
Length = 1181
Score = 26.2 bits (55), Expect = 9.5
Identities = 19/74 (25%), Positives = 32/74 (43%), Gaps = 2/74 (2%)
Frame = -2
Query: 271 QYVKKPKKIPRCGQCKSKLRGIQPARPAERSRLCYRKKTVKRVYGG--VLCHKCVKQRIV 98
+YVK+ KIP+ K + ++P P + Y +T+ G VLC + +V
Sbjct: 529 KYVKQAAKIPQPAVLKEDPQAVKPRPPKKDVLAGYSVETIFLALTGETVLCRSHSLEDLV 588
Query: 97 RAFLIEEQKIVKVL 56
R E + +L
Sbjct: 589 RLKQEELDAVTSIL 602
>Z81015-2|CAB02660.1| 411|Caenorhabditis elegans Hypothetical
protein C11E4.3 protein.
Length = 411
Score = 26.2 bits (55), Expect = 9.5
Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 5/55 (9%)
Frame = -2
Query: 403 FFPCHQLSKSLK-----MVQRLTFRRRLSYNTKSNQRRIVRTPGGRLVYQYVKKP 254
F+ C K L MV+R+ RR + Y T+ N + GR+V+ +K P
Sbjct: 193 FYECQLAGKILDCCNDLMVRRVVMRRGICYQTRKNVNQSEADDIGRIVFS-LKAP 246
>Z78018-7|CAB01449.2| 2577|Caenorhabditis elegans Hypothetical
protein F15B9.7 protein.
Length = 2577
Score = 26.2 bits (55), Expect = 9.5
Identities = 13/42 (30%), Positives = 22/42 (52%)
Frame = +2
Query: 101 NALLDAFMAEDTTIDTFHCFLTVAKTGTFSRSSWLDTTEFAL 226
N ++D F+ E ++ + F +GT SS LD +FA+
Sbjct: 816 NGIVDYFLNESSSSPSIQLFRLDRTSGTLRVSSKLDREQFAV 857
>Z78013-10|CAB01427.2| 2577|Caenorhabditis elegans Hypothetical
protein F15B9.7 protein.
Length = 2577
Score = 26.2 bits (55), Expect = 9.5
Identities = 13/42 (30%), Positives = 22/42 (52%)
Frame = +2
Query: 101 NALLDAFMAEDTTIDTFHCFLTVAKTGTFSRSSWLDTTEFAL 226
N ++D F+ E ++ + F +GT SS LD +FA+
Sbjct: 816 NGIVDYFLNESSSSPSIQLFRLDRTSGTLRVSSKLDREQFAV 857
>U97016-5|AAB52352.1| 196|Caenorhabditis elegans Hypothetical
protein B0261.5 protein.
Length = 196
Score = 26.2 bits (55), Expect = 9.5
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = -1
Query: 389 PAVKKLENGAAAYIQATTVVQHKIKSKKNSKD 294
P+ K + + + +TT+ Q K SK+ SKD
Sbjct: 30 PSQSKKKPSKVSTVTSTTISQEKTNSKRGSKD 61
>AY314773-1|AAQ84880.1| 2596|Caenorhabditis elegans flamingo-like
protein FMI-1 protein.
Length = 2596
Score = 26.2 bits (55), Expect = 9.5
Identities = 13/42 (30%), Positives = 22/42 (52%)
Frame = +2
Query: 101 NALLDAFMAEDTTIDTFHCFLTVAKTGTFSRSSWLDTTEFAL 226
N ++D F+ E ++ + F +GT SS LD +FA+
Sbjct: 816 NGIVDYFLNESSSSPSIQLFRLDRTSGTLRVSSKLDREQFAV 857
>AC025727-10|AAK66029.1| 707|Caenorhabditis elegans Hypothetical
protein Y73E7A.8 protein.
Length = 707
Score = 26.2 bits (55), Expect = 9.5
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = -2
Query: 223 SKLRGIQPARPAERSRLCYRKKTVKRVYGGVL 128
+KL +P RP ++ R KT+K YG VL
Sbjct: 584 TKLLAKKPRRPIKKRVKTQRTKTIKLHYGDVL 615
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,078,492
Number of Sequences: 27780
Number of extensions: 182976
Number of successful extensions: 424
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 412
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 424
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 683806592
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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