Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_pT_C22
         (819 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1450.04 |tef5||translation elongation factor EF-1 beta subun...   136   4e-33
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce...    29   0.79 
SPBP35G2.03c |sgo1||shugoshin Sgo1|Schizosaccharomyces pombe|chr...    27   2.4  
SPAC11D3.17 |||zinc finger protein|Schizosaccharomyces pombe|chr...    27   4.2  
SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence orphan|Sc...    27   4.2  
SPAC1071.01c |pta1|SPAC4H3.15c|mRNA cleavage and polyadenylation...    26   7.4  
SPBC36B7.07 |tlg1||SNARE Tgl1|Schizosaccharomyces pombe|chr 2|||...    25   9.8  

>SPCC1450.04 |tef5||translation elongation factor EF-1 beta subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 214

 Score =  136 bits (329), Expect = 4e-33
 Identities = 64/104 (61%), Positives = 80/104 (76%)
 Frame = -3

Query: 325 RLAAYNAKKAKKPVLIAKSNIILDVKPWDDETDMAALEQAVRSISTDGLLWGAAKLVPLA 146
           R+A YN KKA KP  + KS + LDVKPWDDET M  LE+AVRSI  DGL+WG +KLVP+ 
Sbjct: 111 RVAEYNKKKAAKPKAVHKSLVTLDVKPWDDETPMDELEKAVRSIQMDGLVWGLSKLVPVG 170

Query: 145 YGIHKLQISCVVEDDKVXIDWLTEEIEKNEDYVQSVDIAAFNKV 14
           +G++K QI+ VVEDDKV ++ L EE+E  EDYVQS DIAA +K+
Sbjct: 171 FGVNKFQINLVVEDDKVSLEALQEELEGFEDYVQSTDIAAMSKL 214


>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1957

 Score = 29.1 bits (62), Expect = 0.79
 Identities = 12/26 (46%), Positives = 18/26 (69%)
 Frame = -3

Query: 589 TELSTKVISLENENKDLKKAIDDLRN 512
           T+  +K+ S E ENK LK +ID+ +N
Sbjct: 388 TDAESKLSSFEQENKSLKGSIDEYQN 413


>SPBP35G2.03c |sgo1||shugoshin Sgo1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 319

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 13/35 (37%), Positives = 22/35 (62%)
 Frame = -3

Query: 592 NTELSTKVISLENENKDLKKAIDDLRNLVISLQVR 488
           NT+LS K+   ENE +DL +    L++ ++ L+ R
Sbjct: 36  NTQLSIKIRESENEIQDLIQENFTLKSYLVKLEAR 70


>SPAC11D3.17 |||zinc finger protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 585

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 11/35 (31%), Positives = 18/35 (51%)
 Frame = +2

Query: 248 LYIQNNIRLCN*HWLFSFLCIICSKTLFLYLSCFS 352
           LY+Q +       W+F    + C+ +LF   +CFS
Sbjct: 210 LYLQGDPERVKKAWVFQSRLLFCTASLFEKTACFS 244


>SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence
           orphan|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 776

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 14/51 (27%), Positives = 26/51 (50%)
 Frame = -3

Query: 625 MDSVATLAGVPNTELSTKVISLENENKDLKKAIDDLRNLVISLQVRVETLE 473
           M ++  ++G   T + +    +E+ENK L   + D+RN V  L+  +   E
Sbjct: 247 MQAIDDISGTIET-IKSDCYKVESENKGLINEVMDMRNFVQQLEQELYAFE 296


>SPAC1071.01c |pta1|SPAC4H3.15c|mRNA cleavage and polyadenylation
           specificity factor complex subunit
           Pta1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 670

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = -3

Query: 661 KARQHIKNSLECMDSVATLAGVPNTELSTKVIS 563
           K  Q +  ++ C+D++ +L  V N E+   VIS
Sbjct: 63  KFEQKLDLAVTCLDTIVSLYAVDNEEVKKDVIS 95


>SPBC36B7.07 |tlg1||SNARE Tgl1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 225

 Score = 25.4 bits (53), Expect = 9.8
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -3

Query: 595 PNTELSTKVISLENENKDLKKAID 524
           PNTEL+  +  L    KDLK A++
Sbjct: 37  PNTELTYAIDELSETLKDLKAAVE 60


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,848,403
Number of Sequences: 5004
Number of extensions: 50963
Number of successful extensions: 155
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 155
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 400438000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)