Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_pT_C22
         (819 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1260 - 25260872-25261101,25261199-25261312,25261473-252615...   116   3e-26
03_04_0016 + 16461542-16461566,16462701-16462732,16463015-164631...   116   3e-26
07_03_1580 + 27888275-27888360,27888755-27888871,27888964-278890...   112   4e-25
07_01_0243 - 1783903-1784658                                           29   4.4  
01_01_0538 - 3938389-3939727,3939828-3940203,3940299-3940516,394...    29   4.4  
08_01_0778 + 7548307-7549220,7551682-7552021                           29   5.9  
06_03_0860 + 25484826-25485758,25486155-25486406                       29   5.9  
05_07_0093 - 27648656-27648736,27649034-27649147,27649229-276492...    29   5.9  
01_06_1261 - 35826513-35828941,35829201-35829294                       29   5.9  
05_06_0099 + 25572530-25573603,25574178-25574633,25575165-25575449     28   7.8  

>07_03_1260 -
           25260872-25261101,25261199-25261312,25261473-25261596,
           25261755-25261839,25261917-25262033,25262122-25262207
          Length = 251

 Score =  116 bits (278), Expect = 3e-26
 Identities = 58/107 (54%), Positives = 73/107 (68%), Gaps = 3/107 (2%)
 Frame = -3

Query: 325 RLAAYNAKKAKKPVLIAKSNIILDVKPWDDETDMAALEQAVRSISTDGLLWGAAKLVPLA 146
           R AA  A   KK     KS+++LDVKPWDDETDM  LE+AVR++  +GLLWGA+KLVP+ 
Sbjct: 125 RAAAVKASGKKKES--GKSSVLLDVKPWDDETDMTKLEEAVRNVKMEGLLWGASKLVPVG 182

Query: 145 YGIHKLQISCVVEDDKVXIDWLTEE---IEKNEDYVQSVDIAAFNKV 14
           YGI KLQI   + DD V +D L E+    E   +Y+QS DI AFNK+
Sbjct: 183 YGIKKLQIMMTIVDDLVSVDSLIEDYFYTEPANEYIQSCDIVAFNKI 229


>03_04_0016 +
           16461542-16461566,16462701-16462732,16463015-16463100,
           16463189-16463305,16463399-16463474,16463695-16463818,
           16464482-16464595,16464700-16464947
          Length = 273

 Score =  116 bits (278), Expect = 3e-26
 Identities = 58/107 (54%), Positives = 74/107 (69%), Gaps = 3/107 (2%)
 Frame = -3

Query: 325 RLAAYNAKKAKKPVLIAKSNIILDVKPWDDETDMAALEQAVRSISTDGLLWGAAKLVPLA 146
           R AA  A   KK     KS+++LDVKPWDDETDMA LE+AVR++  +GLLWGA+KLVP+ 
Sbjct: 141 RAAAVKASGKKKES--GKSSVLLDVKPWDDETDMAKLEEAVRNVKMEGLLWGASKLVPVG 198

Query: 145 YGIHKLQISCVVEDDKVXIDWLTEE---IEKNEDYVQSVDIAAFNKV 14
           YGI KLQI   + DD V +D L E+    E   +++QS DI AFNK+
Sbjct: 199 YGIKKLQIMMTIVDDLVSVDSLIEDYFYTEPANEFIQSCDIVAFNKI 245


>07_03_1580 +
           27888275-27888360,27888755-27888871,27888964-27889045,
           27889710-27889821,27889958-27890071,27890163-27890326
          Length = 224

 Score =  112 bits (269), Expect = 4e-25
 Identities = 55/101 (54%), Positives = 70/101 (69%), Gaps = 3/101 (2%)
 Frame = -3

Query: 307 AKKAKKPVLIAKSNIILDVKPWDDETDMAALEQAVRSISTDGLLWGAAKLVPLAYGIHKL 128
           +K + K     KS+++LDVKPWDDETDM  LE+AVRS+  +GL WGA+KLVP+ YGI KL
Sbjct: 124 SKASSKKKESGKSSVLLDVKPWDDETDMKKLEEAVRSVQMEGLTWGASKLVPVGYGIKKL 183

Query: 127 QISCVVEDDKVXIDWLTEE---IEKNEDYVQSVDIAAFNKV 14
           QI   + DD V +D L EE    E   ++VQS DI AFNK+
Sbjct: 184 QIMLTIVDDLVSVDSLIEEHLTEEPINEFVQSCDIVAFNKI 224


>07_01_0243 - 1783903-1784658
          Length = 251

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 14/40 (35%), Positives = 26/40 (65%)
 Frame = -1

Query: 501 ACKSVLKPWNHPAVSPLIVFNQKNLQQLLLIRMTKMMMLI 382
           +C S++ P   P + PL+  +Q +L++LLL   + MM+L+
Sbjct: 59  SCPSLVPP---PRLLPLVPLHQSHLRRLLLSLTSSMMVLV 95


>01_01_0538 -
           3938389-3939727,3939828-3940203,3940299-3940516,
           3940607-3940769,3940866-3941100,3941186-3941353
          Length = 832

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 19/62 (30%), Positives = 31/62 (50%)
 Frame = -3

Query: 667 VAKARQHIKNSLECMDSVATLAGVPNTELSTKVISLENENKDLKKAIDDLRNLVISLQVR 488
           +A AR  ++   E     A L     TEL  +   L+ +N++ + AI D+  L+I  + R
Sbjct: 305 IATARDSLRQREEAKKKQAEL-----TELENEATELKQKNEEERVAIQDMEALLIKRRRR 359

Query: 487 VE 482
           VE
Sbjct: 360 VE 361


>08_01_0778 + 7548307-7549220,7551682-7552021
          Length = 417

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 15/65 (23%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
 Frame = -3

Query: 202 RSISTDGLLWGAAKLVPLA-YGIHKLQISCV-VEDDKVXIDWLTEEIEKNEDYVQSVDIA 29
           R + +D LL    K + +A +G+ ++++    +  +     W+  E+ ++  Y Q VD+ 
Sbjct: 261 RDLKSDNLLISGDKSIKIADFGVARIEVKTEGMTPETGTYRWMAPEVIQHRPYDQKVDVY 320

Query: 28  AFNKV 14
           +F  V
Sbjct: 321 SFGIV 325


>06_03_0860 + 25484826-25485758,25486155-25486406
          Length = 394

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 17/65 (26%), Positives = 31/65 (47%), Gaps = 2/65 (3%)
 Frame = -3

Query: 202 RSISTDGLLWGAAKLVPLA-YGIHKLQISC-VVEDDKVXIDWLTEEIEKNEDYVQSVDIA 29
           R + +  LL      V +A +G   L+ +C   + +K    W+  E+ K + Y + VD+ 
Sbjct: 221 RDLKSQNLLLNDEMRVKVADFGTSCLETACQATKGNKGTYRWMAPEMTKEKPYTRKVDVY 280

Query: 28  AFNKV 14
           +F  V
Sbjct: 281 SFGIV 285


>05_07_0093 -
           27648656-27648736,27649034-27649147,27649229-27649288,
           27649464-27649687,27649799-27649886,27650326-27650532,
           27650566-27650784,27650903-27651001,27651439-27651504,
           27651654-27651737,27651829-27651888,27652041-27652325,
           27652789-27652836,27652988-27653034,27653442-27653556,
           27653958-27654032,27654227-27654298,27654944-27656124,
           27656613-27656757
          Length = 1089

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 12/47 (25%), Positives = 26/47 (55%)
 Frame = -3

Query: 652 QHIKNSLECMDSVATLAGVPNTELSTKVISLENENKDLKKAIDDLRN 512
           + ++  ++ M++    A   +   + ++  L NEN+ LK  IDDL++
Sbjct: 421 EKLRREMKMMEAALQGAARQSQSKADEIARLMNENEQLKSTIDDLKS 467


>01_06_1261 - 35826513-35828941,35829201-35829294
          Length = 840

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 22/63 (34%), Positives = 33/63 (52%)
 Frame = -3

Query: 661 KARQHIKNSLECMDSVATLAGVPNTELSTKVISLENENKDLKKAIDDLRNLVISLQVRVE 482
           K +Q  ++S E   S   LAG  + E+  KVISLE         I+ ++N    LQ R++
Sbjct: 311 KVKQKFESSSEA--SAVHLAGQVD-EIVDKVISLEIAASSQNAQINRMKNEADELQKRLD 367

Query: 481 TLE 473
           +LE
Sbjct: 368 SLE 370


>05_06_0099 + 25572530-25573603,25574178-25574633,25575165-25575449
          Length = 604

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 16/65 (24%), Positives = 32/65 (49%), Gaps = 2/65 (3%)
 Frame = -3

Query: 202 RSISTDGLLW-GAAKLVPLAYGIHKLQISC-VVEDDKVXIDWLTEEIEKNEDYVQSVDIA 29
           R +  + +L+ G      + +G+   ++ C  +EDD     W+  E+ K + Y + VD+ 
Sbjct: 420 RDVKPENILFDGECCAKVVDFGVACEEVYCNSLEDDPGTYRWMAPEMYKRKPYGRKVDVY 479

Query: 28  AFNKV 14
           +F  V
Sbjct: 480 SFGLV 484


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,905,901
Number of Sequences: 37544
Number of extensions: 309266
Number of successful extensions: 738
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 721
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 735
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2244686244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)