Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_pT_C20
         (694 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC115.02c |||AFG1 family mitochondrial ATPase|Schizosaccharomy...    71   2e-13
SPBC15D4.03 |slm9||hira protein Slm9|Schizosaccharomyces pombe|c...    27   3.4  
SPBC119.15 |||AAA family ATPase, unknown biological role|Schizos...    26   4.5  
SPBC119.02 |ubc4||ubiquitin conjugating enzyme Ubc4|Schizosaccha...    25   7.9  
SPBC4F6.11c |||asparagine synthase |Schizosaccharomyces pombe|ch...    25   7.9  

>SPBC115.02c |||AFG1 family mitochondrial ATPase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 454

 Score = 70.9 bits (166), Expect = 2e-13
 Identities = 41/133 (30%), Positives = 68/133 (51%)
 Frame = -3

Query: 686 GGVLDSTXEELCDRPLGASDYLVISKTFHTVFIRNLPQLSISKHRSQLRRFITLIDTLYD 507
           G V   T E+LC  P  A+DYL ++  +H   + ++P+LSI + +  + RFIT ID LYD
Sbjct: 323 GNVAWFTFEQLCGEPKSAADYLSLASRYHVFIVSDIPKLSI-ESKDLIHRFITFIDALYD 381

Query: 506 NRVRVVIAADSEPKNLMKLDETEFGDADRALMDDLKITKDSEDAKATIFTGEEEMFACDR 327
              +++++++   + +     +E   +        KI      A    F G EE+F   R
Sbjct: 382 THGKLILSSEVPVQEIYPTAPSEVLSSTADPAAKGKIESHYHGA----FGGIEEVFTFTR 437

Query: 326 CLSRIMEMQTDEY 288
           CLSR+ EM+   +
Sbjct: 438 CLSRLSEMKKQSW 450


>SPBC15D4.03 |slm9||hira protein Slm9|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 807

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 12/22 (54%), Positives = 17/22 (77%)
 Frame = -3

Query: 623 LVISKTFHTVFIRNLPQLSISK 558
           LVISK+F T+ ++N  QLS+ K
Sbjct: 461 LVISKSFGTLIVKNHNQLSLLK 482


>SPBC119.15 |||AAA family ATPase, unknown biological
           role|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 367

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -3

Query: 416 LMDDLKITKDSEDAKATIFTGEEE 345
           LM D+ ++KD ED   T+   E+E
Sbjct: 293 LMKDMHVSKDKEDVGLTVSDAEDE 316


>SPBC119.02 |ubc4||ubiquitin conjugating enzyme
           Ubc4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 147

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 13/44 (29%), Positives = 24/44 (54%)
 Frame = +1

Query: 244 EVNFC*FICVPHFSQYSSVCISIIRERHRSHANISSSPVNIVAL 375
           +VNF   I  P+ +   S+C+ I+R++      IS   ++I +L
Sbjct: 66  KVNFTTRIYHPNINSNGSICLDILRDQWSPALTISKVLLSICSL 109


>SPBC4F6.11c |||asparagine synthase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 548

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 10/33 (30%), Positives = 20/33 (60%)
 Frame = -3

Query: 635 ASDYLVISKTFHTVFIRNLPQLSISKHRSQLRR 537
           +SD+  +   FH+V +  +P+++ SK   QL +
Sbjct: 169 SSDFREVEPGFHSVQVDLIPKINFSKSLMQLEK 201


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,603,589
Number of Sequences: 5004
Number of extensions: 52085
Number of successful extensions: 97
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 93
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 95
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 321951680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)