Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_pT_C20
         (694 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006610-2|AAK85448.1|  445|Caenorhabditis elegans Hypothetical ...   121   6e-28
Z50742-1|CAA90614.2|  605|Caenorhabditis elegans Hypothetical pr...    29   3.2  
Z83216-3|CAB05674.2|  232|Caenorhabditis elegans Hypothetical pr...    29   4.2  
Z73898-7|CAA98070.1|  577|Caenorhabditis elegans Hypothetical pr...    28   5.5  
U29515-1|AAC06328.1|  449|Caenorhabditis elegans fem-2 protein.        28   7.3  
U28412-8|AAC46598.1|  449|Caenorhabditis elegans Feminization of...    28   7.3  

>AC006610-2|AAK85448.1|  445|Caenorhabditis elegans Hypothetical
           protein C30F12.2 protein.
          Length = 445

 Score =  121 bits (291), Expect = 6e-28
 Identities = 63/139 (45%), Positives = 85/139 (61%), Gaps = 5/139 (3%)
 Frame = -3

Query: 689 CGGVLDSTXEELCDRPLGASDYLVISKTFHTVFIRNLPQLSISKHRSQLRRFITLIDTLY 510
           CGGV D   +ELC    GA DYLV ++ FHTV +RN+P ++     + +RRFIT+IDT Y
Sbjct: 294 CGGVADVDFKELCMTAKGAVDYLVYARVFHTVIVRNIPIMNQDMWNA-MRRFITMIDTFY 352

Query: 509 DNRVRVVIAADSEPKNLMKLD-----ETEFGDADRALMDDLKITKDSEDAKATIFTGEEE 345
           D +VRVVI A +    L + +          D+ R LMDDL I  D E   A +F+G+EE
Sbjct: 353 DQKVRVVIGAAAPLDELFQFEGHNTSHDALSDSKRMLMDDLGIKSDHEGMSANVFSGDEE 412

Query: 344 MFACDRCLSRIMEMQTDEY 288
            FA  R +SR+ EMQT++Y
Sbjct: 413 AFAYSRTVSRLYEMQTEKY 431


>Z50742-1|CAA90614.2|  605|Caenorhabditis elegans Hypothetical
           protein K09A11.1 protein.
          Length = 605

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 24/76 (31%), Positives = 39/76 (51%), Gaps = 7/76 (9%)
 Frame = -3

Query: 629 DYLVISKTFHTVFIRNLPQ--LSISKHRS-QLRRFITL----IDTLYDNRVRVVIAADSE 471
           DYLV  K + +   +N P+  L++ +H   +L ++ +       TL D R + +   DS+
Sbjct: 386 DYLV--KAYEST--QNQPEAFLAVKEHMERELHKYTSCQYLKFSTLLDPRYKDLYTNDSD 441

Query: 470 PKNLMKLDETEFGDAD 423
             NL+K  ETEF   D
Sbjct: 442 TSNLIKAIETEFETMD 457


>Z83216-3|CAB05674.2|  232|Caenorhabditis elegans Hypothetical
           protein C08F11.3 protein.
          Length = 232

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +3

Query: 246 SKFLLVYMCSPFLPIFVGLHFHYT*KTSI 332
           S+FL V+ C  FLP+ + + F Y  K S+
Sbjct: 92  SEFLTVFCCILFLPVTLHMRFEYFYKKSV 120


>Z73898-7|CAA98070.1|  577|Caenorhabditis elegans Hypothetical
           protein ZK822.5a protein.
          Length = 577

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 17/45 (37%), Positives = 23/45 (51%)
 Frame = +3

Query: 261 VYMCSPFLPIFVGLHFHYT*KTSITCKHFFFTRKYSSFGIFRVFS 395
           +  C  FLP+F     H   K   TC H +F  +Y+S  I R+FS
Sbjct: 100 IVTCFVFLPVF-----H---KMKSTCLHEYFIHRYNSILIRRLFS 136


>U29515-1|AAC06328.1|  449|Caenorhabditis elegans fem-2 protein.
          Length = 449

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 30/106 (28%), Positives = 48/106 (45%), Gaps = 12/106 (11%)
 Frame = -3

Query: 686 GGVLDSTXEELCDRPLGASDYLV------ISKTFHTVFIRNLPQLSISKH----RSQLRR 537
           G  + S   E C  P+ +SDYLV      IS  F+   +  L +   + +     ++L R
Sbjct: 343 GRPMISNEPETCQVPIESSDYLVLLACDGISDVFNERDLYQLVEAFANDYPVEDYAELSR 402

Query: 536 FI--TLIDTLYDNRVRVVIAADSEPKNLMKLDETEFGDADRALMDD 405
           FI    I+    + V VVI     P+++ KL + E  D D  + D+
Sbjct: 403 FICTKAIEAGSADNVSVVIGFLRPPQDVWKLMKHESDDEDSDVTDE 448


>U28412-8|AAC46598.1|  449|Caenorhabditis elegans Feminization of xx
           and xo animalsprotein 2 protein.
          Length = 449

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 30/106 (28%), Positives = 48/106 (45%), Gaps = 12/106 (11%)
 Frame = -3

Query: 686 GGVLDSTXEELCDRPLGASDYLV------ISKTFHTVFIRNLPQLSISKH----RSQLRR 537
           G  + S   E C  P+ +SDYLV      IS  F+   +  L +   + +     ++L R
Sbjct: 343 GRPMISNEPETCQVPIESSDYLVLLACDGISDVFNERDLYQLVEAFANDYPVEDYAELSR 402

Query: 536 FI--TLIDTLYDNRVRVVIAADSEPKNLMKLDETEFGDADRALMDD 405
           FI    I+    + V VVI     P+++ KL + E  D D  + D+
Sbjct: 403 FICTKAIEAGSADNVSVVIGFLRPPQDVWKLMKHESDDEDSDVTDE 448


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,169,393
Number of Sequences: 27780
Number of extensions: 285325
Number of successful extensions: 558
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 546
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 556
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1592382278
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)