Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_pT_C13
         (813 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha...    27   2.4  
SPBC8D2.07c |sfc9||transcription factor TFIIIC complex subunit S...    26   5.5  
SPAC22A12.10 |||diacylglycerol cholinephosphotranferase/ diacylg...    26   7.3  
SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase Rqh1|...    26   7.3  

>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 578

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 16/34 (47%), Positives = 20/34 (58%)
 Frame = -3

Query: 328 LSNQNMVKYLISLKQIVFLPI*QIACLFLWLLLK 227
           + N  +V  LISLK+ VFL I  +  LF   LLK
Sbjct: 16  IDNNYLVTTLISLKENVFLHIFTLTFLFKAFLLK 49


>SPBC8D2.07c |sfc9||transcription factor TFIIIC complex subunit Sfc9
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 673

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = -2

Query: 290 ETNSLFTNITNSLSIFMVT 234
           E   +FT +TNSLS F+VT
Sbjct: 455 EKTDIFTMLTNSLSSFLVT 473


>SPAC22A12.10 |||diacylglycerol cholinephosphotranferase/
           diacylglycerol ethanolaminesphotranferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 386

 Score = 25.8 bits (54), Expect = 7.3
 Identities = 8/19 (42%), Positives = 17/19 (89%)
 Frame = +3

Query: 120 SISKSLMTIFGIGYVIINL 176
           S++ +L+T+ G+G+V+IN+
Sbjct: 44  SMAPNLITLIGLGFVVINI 62


>SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase
           Rqh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1328

 Score = 25.8 bits (54), Expect = 7.3
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = +3

Query: 642 MTVTPSNIPRFLSWFIFHSFFRHIEN 719
           MTVT +N+ R L WF F    + IEN
Sbjct: 1   MTVTKTNLNRHLDWF-FRESPQKIEN 25


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,423,219
Number of Sequences: 5004
Number of extensions: 76206
Number of successful extensions: 188
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 183
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 188
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 396433620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)