Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_pT_C13
         (813 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024785-2|AAF60599.2|  467|Caenorhabditis elegans C-type lectin...    29   5.2  
AF067613-13|ABA54415.1|  443|Caenorhabditis elegans Hypothetical...    28   9.1  
AC024785-4|AAF60602.3|  466|Caenorhabditis elegans C-type lectin...    28   9.1  

>AC024785-2|AAF60599.2|  467|Caenorhabditis elegans C-type lectin
           protein 71 protein.
          Length = 467

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 10/25 (40%), Positives = 19/25 (76%)
 Frame = -2

Query: 632 LSKVRQYYNVPDFLPSDAEFSGTEN 558
           ++KVRQY+ + +FL S+  F G+++
Sbjct: 288 VAKVRQYHGIVNFLASNVPFGGSQS 312


>AF067613-13|ABA54415.1|  443|Caenorhabditis elegans Hypothetical
           protein F56D6.1 protein.
          Length = 443

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 11/25 (44%), Positives = 18/25 (72%)
 Frame = -2

Query: 635 ILSKVRQYYNVPDFLPSDAEFSGTE 561
           I+SKVR+Y+ + +FL S+    GT+
Sbjct: 273 IVSKVRKYHGIVNFLASNTPSGGTQ 297


>AC024785-4|AAF60602.3|  466|Caenorhabditis elegans C-type lectin
           protein 72 protein.
          Length = 466

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 11/25 (44%), Positives = 19/25 (76%)
 Frame = -2

Query: 632 LSKVRQYYNVPDFLPSDAEFSGTEN 558
           ++KVRQY+ + +FL S+A   GT++
Sbjct: 287 VAKVRQYHGMVNFLASNAPSGGTQS 311


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,566,914
Number of Sequences: 27780
Number of extensions: 416695
Number of successful extensions: 1044
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 915
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1044
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1998381620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)