Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_pT_C08
         (727 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC8E11.02c |rad24||14-3-3 protein Rad24|Schizosaccharomyces po...   149   3e-37
SPAC17A2.13c |rad25||14-3-3 protein Rad25|Schizosaccharomyces po...   140   1e-34
SPAC23H3.05c |swd1||COMPASS complex subunit Swd1|Schizosaccharom...    27   2.1  
SPAC222.06 |mak16||nuclear HMG-like acidic protein Mak16|Schizos...    27   2.7  
SPAC11E3.10 |||VanZ-like family protein|Schizosaccharomyces pomb...    26   4.8  
SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces...    25   8.3  

>SPAC8E11.02c |rad24||14-3-3 protein Rad24|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 270

 Score =  149 bits (362), Expect = 3e-37
 Identities = 68/88 (77%), Positives = 81/88 (92%)
 Frame = -3

Query: 572 IKAYQDAFEISKAKMQPTHPIRLGLALNFSVFYYEILNSPDKACQLAKQAFDDAIAELDT 393
           ++ Y+ A EI+ A++ PTHPIRLGLALNFSVFYYEILNSPD+AC LAKQAFD+AI+ELD+
Sbjct: 151 LEGYKAASEIATAELAPTHPIRLGLALNFSVFYYEILNSPDRACYLAKQAFDEAISELDS 210

Query: 392 LNEDSYKDSTLIMQLLRDNLTLWTSDTQ 309
           L+E+SYKDSTLIMQLLRDNLTLWTSD +
Sbjct: 211 LSEESYKDSTLIMQLLRDNLTLWTSDAE 238



 Score = 74.1 bits (174), Expect = 2e-14
 Identities = 34/51 (66%), Positives = 40/51 (78%)
 Frame = -2

Query: 726 KELREIXYDVLGLLDKHLIPKASNPESKVFYLKMKGDYYRYLAEVATGETR 574
           +EL  I  D+L +L+KHLIP A++ ESKVFY KMKGDYYRYLAE A GE R
Sbjct: 93  QELDTICQDILTVLEKHLIPNAASAESKVFYYKMKGDYYRYLAEFAVGEKR 143


>SPAC17A2.13c |rad25||14-3-3 protein Rad25|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 270

 Score =  140 bits (340), Expect = 1e-34
 Identities = 67/104 (64%), Positives = 85/104 (81%)
 Frame = -3

Query: 620 EITTGTLQKWPQEKPDIKAYQDAFEISKAKMQPTHPIRLGLALNFSVFYYEILNSPDKAC 441
           E T G + K   +   ++AY+ A +I+ A++ PT P+RLGLALNFSVFYYEIL+SP+ AC
Sbjct: 135 EFTVGEVCKEAADS-SLEAYKAASDIAVAELPPTDPMRLGLALNFSVFYYEILDSPESAC 193

Query: 440 QLAKQAFDDAIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSDTQ 309
            LAKQ FD+AI+ELD+L+E+SYKDSTLIMQLLRDNLTLWTSD +
Sbjct: 194 HLAKQVFDEAISELDSLSEESYKDSTLIMQLLRDNLTLWTSDAE 237



 Score = 73.3 bits (172), Expect = 3e-14
 Identities = 33/48 (68%), Positives = 38/48 (79%)
 Frame = -2

Query: 723 ELREIXYDVLGLLDKHLIPKASNPESKVFYLKMKGDYYRYLAEVATGE 580
           EL +I +DVL +L+KHLIP A+  ESKVFY KMKGDYYRYLAE   GE
Sbjct: 93  ELSDICHDVLSVLEKHLIPAATTGESKVFYYKMKGDYYRYLAEFTVGE 140


>SPAC23H3.05c |swd1||COMPASS complex subunit
           Swd1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 398

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
 Frame = +3

Query: 156 LASASVMIPRQTTFSNVTRFLI-NTDENKCVCWGECGEILVVAA 284
           L + SV+I   +TFS V+R L  +T   + VCW  C   L+ A+
Sbjct: 43  LVNGSVVIWDLSTFS-VSRVLTGHTRAIQSVCWSSCDRFLLTAS 85


>SPAC222.06 |mak16||nuclear HMG-like acidic protein
           Mak16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 302

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 16/42 (38%), Positives = 19/42 (45%)
 Frame = -1

Query: 637 LPQNERRLLQVPCRSGHRRNQTLKHTKMLLKSARRKCSPHTP 512
           L Q +++LL  P R  HR  Q L      L  ARR    H P
Sbjct: 90  LEQIDQQLLYWPGRQIHRCKQRLTRLTQYLLKARRLALKHQP 131


>SPAC11E3.10 |||VanZ-like family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 162

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 13/32 (40%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
 Frame = -1

Query: 127 FAADLPVPSKIKCCVIFDGFVF-LYLHWIADI 35
           FA  LPVP   K C  F  F+  L  +W+ D+
Sbjct: 31  FAPALPVPINDKVCHFFVFFLLTLVFYWVFDL 62


>SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 369

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = +2

Query: 65  YKTVKDDTTFNFRRNGKVRCERLLTFLQATARVGFGDDTAPD 190
           ++T   D   +F + G++R  RL+TF       GFG    PD
Sbjct: 237 FETTDADLKEHFGQVGQIRRVRLMTFEDTGKCKGFGFVDFPD 278


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,826,470
Number of Sequences: 5004
Number of extensions: 56279
Number of successful extensions: 180
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 174
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 180
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 341222980
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)