Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P04_pT_C08
(727 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_0753 - 20805672-20805731,20805825-20805941,20806394-208065... 157 1e-38
08_02_1026 + 23743186-23743686,23743793-23743915,23744734-237448... 156 2e-38
03_05_0881 + 28461857-28462263,28462357-28462435,28462798-284629... 153 1e-37
04_04_0141 + 23079516-23079925,23080006-23080084,23080204-230803... 153 2e-37
11_06_0036 + 19474848-19475188,19475696-19475774,19475880-194760... 152 2e-37
02_04_0360 + 22353057-22353691,22354716-22355144,22355233-223553... 151 5e-37
01_01_0767 + 5931031-5931281,5931414-5931594,5932020-5932129,593... 129 2e-30
11_06_0360 - 22699524-22699529,22699865-22699899,22700650-227007... 73 3e-13
01_06_1276 - 35918954-35919106,35919220-35919325,35919477-359195... 30 2.2
08_01_0533 + 4625376-4625709,4625799-4625966,4627428-4627689,462... 29 2.8
02_02_0106 + 6814391-6817007,6817086-6817462 29 3.8
08_02_0539 + 18338781-18339592,18347885-18349860,18350030-18350034 28 6.6
04_04_1588 - 34633057-34633824 28 6.6
>08_02_0753 -
20805672-20805731,20805825-20805941,20806394-20806516,
20806700-20806778,20806867-20807258
Length = 256
Score = 157 bits (380), Expect = 1e-38
Identities = 80/113 (70%), Positives = 90/113 (79%), Gaps = 1/113 (0%)
Frame = -3
Query: 620 EITTGTLQKWPQEKPDIKAYQDAFEISKAKMQPTHPIRLGLALNFSVFYYEILNSPDKAC 441
E TG +K E + AY+ A +I+ A + PTHPIRLGLALNFSVFYYEILNSPDKAC
Sbjct: 135 EFKTGAERKEAAESTMV-AYKAAQDIALADLAPTHPIRLGLALNFSVFYYEILNSPDKAC 193
Query: 440 QLAKQAFDDAIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSD-TQGDGDEPAE 285
LAKQAFD+AI+ELDTL E+SYKDSTLIMQLLRDNLTLWTSD T+ GDE E
Sbjct: 194 NLAKQAFDEAISELDTLGEESYKDSTLIMQLLRDNLTLWTSDLTEDGGDEVKE 246
Score = 66.9 bits (156), Expect = 2e-11
Identities = 31/50 (62%), Positives = 37/50 (74%)
Frame = -2
Query: 723 ELREIXYDVLGLLDKHLIPKASNPESKVFYLKMKGDYYRYLAEVATGETR 574
EL +I +L LLD HL+P ++ ESKVFYLKMKGDY+RYLAE TG R
Sbjct: 93 ELSKICDGILKLLDSHLVPSSTAAESKVFYLKMKGDYHRYLAEFKTGAER 142
>08_02_1026 +
23743186-23743686,23743793-23743915,23744734-23744850,
23744948-23745001
Length = 264
Score = 156 bits (378), Expect = 2e-38
Identities = 76/109 (69%), Positives = 88/109 (80%)
Frame = -3
Query: 620 EITTGTLQKWPQEKPDIKAYQDAFEISKAKMQPTHPIRLGLALNFSVFYYEILNSPDKAC 441
E TG +K + + AYQ A +I+ ++ PTHPIRLGLALNFSVFYYEILNSPD+AC
Sbjct: 145 EFKTGAERKDAADAT-LAAYQAAQDIAMKELSPTHPIRLGLALNFSVFYYEILNSPDRAC 203
Query: 440 QLAKQAFDDAIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSDTQGDGDE 294
LAKQAFD+AI+ELDTL E+SYKDSTLIMQLLRDNLTLWTSD Q DG +
Sbjct: 204 TLAKQAFDEAISELDTLGEESYKDSTLIMQLLRDNLTLWTSDMQDDGGD 252
Score = 62.1 bits (144), Expect = 4e-10
Identities = 29/50 (58%), Positives = 36/50 (72%)
Frame = -2
Query: 723 ELREIXYDVLGLLDKHLIPKASNPESKVFYLKMKGDYYRYLAEVATGETR 574
EL I +L LLD+ L+P A+ ++KVFYLKMKGDY+RYLAE TG R
Sbjct: 103 ELSNICAGILRLLDERLVPAAAAVDAKVFYLKMKGDYHRYLAEFKTGAER 152
>03_05_0881 +
28461857-28462263,28462357-28462435,28462798-28462920,
28463632-28463748,28463861-28463917
Length = 260
Score = 153 bits (371), Expect = 1e-37
Identities = 76/109 (69%), Positives = 86/109 (78%)
Frame = -3
Query: 620 EITTGTLQKWPQEKPDIKAYQDAFEISKAKMQPTHPIRLGLALNFSVFYYEILNSPDKAC 441
E +G +K E + AY+ A +I+ A + THPIRLGLALNFSVFYYEILNSPD+AC
Sbjct: 140 EFKSGAERKEAAENT-LVAYKSAQDIALADLPTTHPIRLGLALNFSVFYYEILNSPDRAC 198
Query: 440 QLAKQAFDDAIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSDTQGDGDE 294
LAKQAFDDAIAELDTL E+SYKDSTLIMQLLRDNLTLWTSD DG +
Sbjct: 199 NLAKQAFDDAIAELDTLGEESYKDSTLIMQLLRDNLTLWTSDNAEDGGD 247
Score = 66.5 bits (155), Expect = 2e-11
Identities = 31/50 (62%), Positives = 37/50 (74%)
Frame = -2
Query: 723 ELREIXYDVLGLLDKHLIPKASNPESKVFYLKMKGDYYRYLAEVATGETR 574
EL +I +L LLD HL+P A+ ESKVFYLKMKGDY+RYLAE +G R
Sbjct: 98 ELSKICDGILKLLDSHLVPSATAAESKVFYLKMKGDYHRYLAEFKSGAER 147
>04_04_0141 +
23079516-23079925,23080006-23080084,23080204-23080326,
23081655-23081771,23081886-23081945
Length = 262
Score = 153 bits (370), Expect = 2e-37
Identities = 76/109 (69%), Positives = 88/109 (80%)
Frame = -3
Query: 620 EITTGTLQKWPQEKPDIKAYQDAFEISKAKMQPTHPIRLGLALNFSVFYYEILNSPDKAC 441
E TG +K E + AY+ A +I+ A++ PTHPIRLGLALNFSVFYYEILNSPD+AC
Sbjct: 141 EFKTGAERKDAAENTMV-AYKAAQDIALAELPPTHPIRLGLALNFSVFYYEILNSPDRAC 199
Query: 440 QLAKQAFDDAIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSDTQGDGDE 294
LAKQAFD+AI+ELDTL+E+SYKDSTLIMQLLRDNLTLWTSD D E
Sbjct: 200 NLAKQAFDEAISELDTLSEESYKDSTLIMQLLRDNLTLWTSDISEDTAE 248
Score = 70.5 bits (165), Expect = 1e-12
Identities = 32/50 (64%), Positives = 38/50 (76%)
Frame = -2
Query: 723 ELREIXYDVLGLLDKHLIPKASNPESKVFYLKMKGDYYRYLAEVATGETR 574
EL +I +L LL+ HL+P ++ PESKVFYLKMKGDYYRYLAE TG R
Sbjct: 99 ELTKICDGILKLLESHLVPSSTAPESKVFYLKMKGDYYRYLAEFKTGAER 148
>11_06_0036 +
19474848-19475188,19475696-19475774,19475880-19476002,
19476970-19477086,19477169-19477228
Length = 239
Score = 152 bits (369), Expect = 2e-37
Identities = 74/109 (67%), Positives = 87/109 (79%)
Frame = -3
Query: 620 EITTGTLQKWPQEKPDIKAYQDAFEISKAKMQPTHPIRLGLALNFSVFYYEILNSPDKAC 441
E +G +K E + AY+ A +I+ A + PTHPIRLGLALNFSVFYYEILNSPD+AC
Sbjct: 118 EFKSGDERKQAAEST-MNAYKAAQDIALADLAPTHPIRLGLALNFSVFYYEILNSPDRAC 176
Query: 440 QLAKQAFDDAIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSDTQGDGDE 294
LAKQAFD+AI+ELD+L E+SYKDSTLIMQLLRDNLTLWTSD DG +
Sbjct: 177 NLAKQAFDEAISELDSLGEESYKDSTLIMQLLRDNLTLWTSDANDDGGD 225
Score = 67.7 bits (158), Expect = 9e-12
Identities = 31/50 (62%), Positives = 36/50 (72%)
Frame = -2
Query: 723 ELREIXYDVLGLLDKHLIPKASNPESKVFYLKMKGDYYRYLAEVATGETR 574
EL I +L LLD HL+P A ESKVFYLKMKGDY+RYLAE +G+ R
Sbjct: 76 ELARICDGILALLDSHLVPSAGAAESKVFYLKMKGDYHRYLAEFKSGDER 125
>02_04_0360 +
22353057-22353691,22354716-22355144,22355233-22355311,
22355472-22355594,22356256-22356372,22356636-22356833
Length = 526
Score = 151 bits (366), Expect = 5e-37
Identities = 74/102 (72%), Positives = 86/102 (84%)
Frame = -3
Query: 620 EITTGTLQKWPQEKPDIKAYQDAFEISKAKMQPTHPIRLGLALNFSVFYYEILNSPDKAC 441
E TG +K E + AY+ A +I+ A++ PTHPIRLGLALNFSVFYYEILNSPD+AC
Sbjct: 359 EFKTGAERKDAAENTMV-AYKAAQDIALAELPPTHPIRLGLALNFSVFYYEILNSPDRAC 417
Query: 440 QLAKQAFDDAIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSD 315
LAKQAFD+AI+ELDTL+E+SYKDSTLIMQLLRDNLTLWTSD
Sbjct: 418 NLAKQAFDEAISELDTLSEESYKDSTLIMQLLRDNLTLWTSD 459
Score = 72.1 bits (169), Expect = 4e-13
Identities = 33/50 (66%), Positives = 38/50 (76%)
Frame = -2
Query: 723 ELREIXYDVLGLLDKHLIPKASNPESKVFYLKMKGDYYRYLAEVATGETR 574
EL +I +L LLD HL+P ++ PESKVFYLKMKGDYYRYLAE TG R
Sbjct: 317 ELSKICDGILKLLDSHLVPSSTAPESKVFYLKMKGDYYRYLAEFKTGAER 366
>01_01_0767 +
5931031-5931281,5931414-5931594,5932020-5932129,
5932212-5932360,5932686-5932738,5933168-5933260
Length = 278
Score = 129 bits (312), Expect = 2e-30
Identities = 61/93 (65%), Positives = 73/93 (78%)
Frame = -3
Query: 554 AFEISKAKMQPTHPIRLGLALNFSVFYYEILNSPDKACQLAKQAFDDAIAELDTLNEDSY 375
A + ++ + PT PIRLGLALN SVFY EI+NSPDKACQLAK AFD+A+AEL +L+E++Y
Sbjct: 146 ASKTAQTDLTPTDPIRLGLALNISVFYCEIMNSPDKACQLAKNAFDEAVAELPSLSEENY 205
Query: 374 KDSTLIMQLLRDNLTLWTSDTQGDGDEPAEGGD 276
KDSTLIMQLLRDNL LW SD D D+ E D
Sbjct: 206 KDSTLIMQLLRDNLALWNSDMADDADDIRERTD 238
Score = 30.3 bits (65), Expect = 1.6
Identities = 12/14 (85%), Positives = 12/14 (85%)
Frame = -2
Query: 624 KGDYYRYLAEVATG 583
KGDYYRYLAE TG
Sbjct: 85 KGDYYRYLAEFKTG 98
>11_06_0360 -
22699524-22699529,22699865-22699899,22700650-22700792,
22701165-22701220,22701367-22701454,22702737-22703037,
22704365-22704428
Length = 230
Score = 72.5 bits (170), Expect = 3e-13
Identities = 31/55 (56%), Positives = 44/55 (80%)
Frame = -3
Query: 470 EILNSPDKACQLAKQAFDDAIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSDTQG 306
EI+NSP++A Q+AKQA D+A AE+++ + YKDS L+MQLL++NL LWTS+ G
Sbjct: 163 EIMNSPERASQVAKQALDEATAEINSAGVEGYKDSMLMMQLLKENLALWTSELTG 217
Score = 57.6 bits (133), Expect = 9e-09
Identities = 25/47 (53%), Positives = 35/47 (74%)
Frame = -2
Query: 723 ELREIXYDVLGLLDKHLIPKASNPESKVFYLKMKGDYYRYLAEVATG 583
ELR + +VL ++ H +P A++ E+ VF+ KMKGDYYRYLAE +TG
Sbjct: 90 ELRAVCNEVLSIIAIHCLPLANSGENVVFFYKMKGDYYRYLAEFSTG 136
>01_06_1276 -
35918954-35919106,35919220-35919325,35919477-35919574,
35919693-35919757,35919877-35920033,35920177-35920268,
35920379-35920493,35920574-35920622,35920705-35920858,
35920993-35921019,35921530-35921707,35922326-35922685,
35922979-35922987,35923170-35923238
Length = 543
Score = 29.9 bits (64), Expect = 2.2
Identities = 31/104 (29%), Positives = 43/104 (41%), Gaps = 2/104 (1%)
Frame = -2
Query: 699 VLGLLDKHLIPKASNPESKVFYLKMKGDYYRYLAEVATGETRH*SIPRCF*NQQGENAAH 520
VLG L KH+I +A K F ++ D+ A + + +PR Q H
Sbjct: 445 VLGPLPKHMIVRADRRAEKYFRRGLRLDWPEGAASRESLKAVW-KLPRL----QNLVMQH 499
Query: 519 TPHKAGSGVKFLSLLL*DIKFARQGV--STRQTGFRRCHRRTGH 394
H AG + L LL AR + + F RCHRR G+
Sbjct: 500 VDHSAGDLIDLLQGLLRYDPDARLKAREALQHPFFTRCHRRCGY 543
>08_01_0533 +
4625376-4625709,4625799-4625966,4627428-4627689,
4627787-4627934,4628453-4628496,4628812-4628859,
4629245-4630509,4630741-4630839,4630916-4631097,
4631186-4631246,4631488-4631725,4631818-4631971,
4632042-4632335
Length = 1098
Score = 29.5 bits (63), Expect = 2.8
Identities = 20/78 (25%), Positives = 37/78 (47%), Gaps = 2/78 (2%)
Frame = -3
Query: 485 SVFYYEILNSPDKACQLAKQAFDDAIAEL-DTLNEDSYKDSTLIMQLLRD-NLTLWTSDT 312
S Y + PD + K++FD+ + E + +Y S + ++ D LWT +
Sbjct: 676 SFLTYPSMKVPDNFIYIHKRSFDECMVECRSNCSCVAYAYSNISSGIIDDTRCLLWTGEL 735
Query: 311 QGDGDEPAEGGDN*YLAA 258
D ++ +GG+N Y+ A
Sbjct: 736 I-DMEKVTQGGENLYIRA 752
>02_02_0106 + 6814391-6817007,6817086-6817462
Length = 997
Score = 29.1 bits (62), Expect = 3.8
Identities = 20/54 (37%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
Frame = -2
Query: 225 CL*ENE*HSRTSSGAVSSPKPTRAVACKNVKSRSQRTFPFRLKL-NVVSSLTVL 67
CL +N H S +SSP PT C N+K F KL N ++SL L
Sbjct: 93 CLLKNLTHLDVSYNNISSPFPTMLYNCSNLKYLDLSNNAFAGKLPNDINSLPAL 146
>08_02_0539 + 18338781-18339592,18347885-18349860,18350030-18350034
Length = 930
Score = 28.3 bits (60), Expect = 6.6
Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 5/40 (12%)
Frame = -2
Query: 723 ELREIXYDVLGLLDKHLIPKASNPES-----KVFYLKMKG 619
+LRE+ YD+ LD+ L+ A+ P S K+ K+KG
Sbjct: 71 DLRELSYDMEDSLDRFLVKSAAEPGSCKKLFKILLTKIKG 110
>04_04_1588 - 34633057-34633824
Length = 255
Score = 28.3 bits (60), Expect = 6.6
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = +3
Query: 237 KCVCWGECGEILVVAALGRLVAIALSV*RPK 329
+CVCW +++ ALG I +V +PK
Sbjct: 68 RCVCWTLLAVLVLAVALGATAGILYAVFKPK 98
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,186,809
Number of Sequences: 37544
Number of extensions: 365386
Number of successful extensions: 1001
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 974
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1000
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1898162308
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -