Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_pT_C07
         (376 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC320.07c |mde7||RNA-binding protein Mde7|Schizosaccharomyces ...    25   3.9  
SPBC16A3.12c |||triglyceride lipase-cholesterol esterase |Schizo...    24   6.8  
SPAC3H1.13 |ppk13||serine/threonine protein kinase Ppk13 |Schizo...    24   9.0  

>SPCC320.07c |mde7||RNA-binding protein Mde7|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 761

 Score = 25.0 bits (52), Expect = 3.9
 Identities = 8/14 (57%), Positives = 12/14 (85%)
 Frame = +3

Query: 162 PTSKYKEVPNSIVN 203
           PT+KY ++PN+I N
Sbjct: 426 PTAKYSQLPNNIAN 439


>SPBC16A3.12c |||triglyceride lipase-cholesterol esterase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 443

 Score = 24.2 bits (50), Expect = 6.8
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -2

Query: 330 LPCHARDAIIIHYKHXKSLF 271
           LP HA++  I HY+H   L+
Sbjct: 390 LPPHAKEVSIAHYEHLDFLW 409


>SPAC3H1.13 |ppk13||serine/threonine protein kinase Ppk13
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 344

 Score = 23.8 bits (49), Expect = 9.0
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = -3

Query: 293 ISTISRYSSELLDNDIV 243
           + T+S Y S L DND+V
Sbjct: 9   LDTLSPYISNLFDNDVV 25


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,152,483
Number of Sequences: 5004
Number of extensions: 15477
Number of successful extensions: 28
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 120195862
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)